PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G086600.1
Common NamePHAVU_011G086600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 336aa    MW: 37588.6 Da    PI: 8.1054
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G086600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.41.5e-07181203123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y C+ Cgk F+r  nL+ H+r H
  Phvul.011G086600.1 181 YFCQVCGKGFKRDANLRMHMRAH 203
                         78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.78E-6179207No hitNo description
Gene3DG3DSA:3.30.160.603.0E-7181235IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003556.7E-4181203IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.193181208IPR007087Zinc finger, C2H2
PROSITE patternPS000280183203IPR007087Zinc finger, C2H2
SMARTSM00355190233266IPR015880Zinc finger, C2H2-like
SMARTSM0035530271293IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
LCYLSLLKDK LGQLQNLVDV FVSPQHNLPE STPMAISTMN STLQEIIVAA TSMRFTCQQM  60
TLGSSSGTSN IADELHRNQN QQQLDHDRLL SLSPHHPSNF GNNNRGMVSM SSISMSSDMI  120
KGQSDFLSSI EGGALDWFAE SYNNNNSGDC NIKDEEADIN VMVESDIIEL DAADLLAKYS  180
YFCQVCGKGF KRDANLRMHM RAHGEEYKTT AALSNPMKSR DSLLGEGSST KKFSCPQEGC  240
RWNQKHAKFQ PLKSMICAKN HYKRSHCPKM YVCNRCNHKQ FSVLSDLRTH EKHCGDPKWQ  300
CSCGTTFSRK DKLMGHVALF VGHTPAIHGF SRYVR*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G086600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007132341.10.0hypothetical protein PHAVU_011G086600g, partial
SwissprotQ0WT241e-101STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLV7AGD10.0V7AGD1_PHAVU; Uncharacterized protein (Fragment)
STRINGXP_007132341.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80993045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-102C2H2 family protein