PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G080200.1
Common NamePHAVU_011G080200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GATA
Protein Properties Length: 296aa    MW: 33142.8 Da    PI: 9.6111
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G080200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.71.6e-18228261134
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                         C +C +tkTp+WR+gp g+ktLCnaCG++yr+ +
  Phvul.011G080200.1 228 CLHCEVTKTPQWREGPMGPKTLCNACGVRYRSGR 261
                         99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.4E-16222272IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.53222258IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.03E-14226283No hitNo description
Gene3DG3DSA:3.30.50.102.1E-14226259IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.57E-15227274No hitNo description
PROSITE patternPS003440228253IPR000679Zinc finger, GATA-type
PfamPF003202.2E-16228261IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MKDWLFFDKT FNGLSDDILD DVTDMELFDL PLEDVETDDG MEQDWDAQFK FIEEPSLGIF  60
PVQSSQLCAR TQNEIVKVET GFSASPAKTA GPGPTYSKNI PIQKVSFKGK DLHQFQTNSP  120
VSVFESSSSS PSVENSNFEL PVIPTKRPRS KRRALSNITL LYSIPFICTS PAFQKFRRTA  180
VSKSDLETQP LGKLSSMVKK QRKKNVPLLA NKEMKRSSSE ESVAVRKCLH CEVTKTPQWR  240
EGPMGPKTLC NACGVRYRSG RLFAEYRPAA SPTFVGSLHS NSHKKVLEIR NRAPR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00047PBMTransfer from AT1G08000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G080200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007132266.10.0hypothetical protein PHAVU_011G080200g
TrEMBLV7AG750.0V7AG75_PHAVU; Uncharacterized protein
STRINGXP_007132266.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57582849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08000.27e-47GATA transcription factor 10