PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.011G067000.1 | ||||||||
Common Name | PHAVU_011G067000g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | MYB_related | ||||||||
Protein Properties | Length: 200aa MW: 22352.4 Da PI: 4.5248 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.1 | 1.7e-12 | 2 | 34 | 14 | 48 |
HHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 14 davkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +++ ++G++ W++Iar+++ gRt++++k++w++++ Phvul.011G067000.1 2 ELHSKWGNR-WSRIARKLP-GRTDNEIKNFWRTHM 34 789******.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-15 | 1 | 35 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.315 | 1 | 38 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.26E-9 | 2 | 39 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0056 | 2 | 36 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-10 | 2 | 33 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.56E-8 | 2 | 34 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MELHSKWGNR WSRIARKLPG RTDNEIKNFW RTHMRKKKAL EKKRASSSSS SSSSSPVSSS 60 SLSSPSSSNH AADSHGSKEV GEESFYDTGG CDDIMGLIGA GDEEGGEKGY SLDDIWEDIV 120 MSEEKDMYDI LQPVYEGHSE EGCNFSCPYP MIYSPSSWEY NSSHPLWVMD EEESSKMLFP 180 TLTDQYYSCY EQGNAFLTG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.011G067000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 2e-58 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007132104.1 | 1e-146 | hypothetical protein PHAVU_011G067000g | ||||
TrEMBL | V7AGW6 | 1e-144 | V7AGW6_PHAVU; Uncharacterized protein | ||||
STRING | XP_007132104.1 | 1e-145 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4378 | 33 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.2 | 6e-35 | myb domain protein 48 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.011G067000.1 |
Entrez Gene | 18615377 |