PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G057400.1
Common NamePHAVU_011G057400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 417aa    MW: 45984.7 Da    PI: 5.8327
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G057400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-12348393655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++Er RR +i +++ +L++l+P+     +k  + a++L +A+eYIk+Lq
  Phvul.011G057400.1 348 SIAERVRRTKISERMRKLQDLVPNM----DKQTNTADMLDLAIEYIKDLQ 393
                         689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.275342392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-16345405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.00E-12346397No hitNo description
Gene3DG3DSA:4.10.280.102.8E-16347407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-9348393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-14348398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0042335Biological Processcuticle development
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MESDLQQHPP VFLDHHQQQT NSGLTRYRSA PSSYFSSIID REFYEHVFNR PSSPETERML  60
TRFVNSLGGG DADADAAAAA DAEEALPTQN PSTVVAVKEE VNQQPKDMPL PPINNEPLVL  120
QQQQQHQQQS NINNYGSSAP QNFYQNTGRP PLPNQIETGR RTASNLIRHG SSPAGLFSNI  180
NIESGYAAAR GMGTMGAVNN STEEANFSPV TRMKNAPNYS SGLMSSRAEI GNKSSTQNNA  240
ENEGFAENQG NEFIPGFPVG SWDDSAIMSD NMTGRKRYRE EDVKPFSGLN VSESQNEAGG  300
QPSTALAHQL SLPNTSAEMA AIEKFLHLSD SVPCKIRAKR GCATHPRSIA ERVRRTKISE  360
RMRKLQDLVP NMDKQTNTAD MLDLAIEYIK DLQKQVETLS DNRDKCTCSH KEQQQQ*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00195DAPTransfer from AT1G51140Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G057400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311180.0KT031118.1 Glycine max clone HN_CCL_179 bHLH transcription factor (Glyma11g13960.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007131988.10.0hypothetical protein PHAVU_011G057400g
TrEMBLV7AEH40.0V7AEH4_PHAVU; Uncharacterized protein
STRINGXP_007131988.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41853455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.15e-77bHLH family protein