PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.011G040800.1 | ||||||||
Common Name | PHAVU_011G040800g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | DBB | ||||||||
Protein Properties | Length: 258aa MW: 28679.2 Da PI: 6.7663 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.3 | 2.8e-07 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ ++++ ++lfC +++ lC+ C +++H+ H++ Phvul.011G040800.1 4 QCDVCHKEVASLFCPSDEAALCHACDSSIHHAnkladkHKR 44 7****************************744477877765 PP | |||||||
2 | zf-B_box | 28 | 4.5e-09 | 56 | 92 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg...Ht 38 + C+ ++ek++ fC++++ llC++C ++ H g Ht Phvul.011G040800.1 56 TLCDICHEKRAYVFCREDRALLCRQCDVSVH-GaneHT 92 68*****************************.547776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.993 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.10E-7 | 3 | 33 | No hit | No description |
Pfam | PF00643 | 1.2E-5 | 4 | 44 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.7E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.48 | 53 | 100 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.4E-14 | 53 | 100 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.17E-9 | 56 | 100 | No hit | No description |
Pfam | PF00643 | 4.7E-7 | 56 | 92 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MKIQCDVCHK EVASLFCPSD EAALCHACDS SIHHANKLAD KHKRFSLHHP TSKATTLCDI 60 CHEKRAYVFC REDRALLCRQ CDVSVHGANE HTKTHDRFLL TGIKLGATTE ERTITTSRNS 120 KLTAQSSLSN QNIGSSRTVG VTCDSSSVPT SSISEYLIQT IPGYCMEDLL DASFASNVCS 180 KDYEQQSAFE NEDDQLQSQF TSASNLYPEI DCLVGVMEMP KAKGGEEYSN WIHSYEYPPY 240 KVPSITPPLV KRTKRSR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.011G040800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007131777.1 | 0.0 | hypothetical protein PHAVU_011G040800g | ||||
Swissprot | Q9LQZ7 | 2e-53 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | V7AI57 | 0.0 | V7AI57_PHAVU; Uncharacterized protein | ||||
STRING | XP_007131777.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1448 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 8e-56 | salt tolerance homolog2 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.011G040800.1 |
Entrez Gene | 18615109 |