PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.010G084900.1 | ||||||||
Common Name | PHAVU_010G084900g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | LBD | ||||||||
Protein Properties | Length: 213aa MW: 23325.8 Da PI: 8.3723 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.8 | 9.9e-40 | 15 | 115 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C aCk+lrrkC+k+C++apyf ++q +++fa+vhk+FGasn +kll ++p ++r da+ +l+yeA arardPvyG+vg++++lqqq+++l Phvul.010G084900.1 15 PCGACKFLRRKCVKGCIFAPYFDSDQgTAHFAAVHKVFGASNASKLLMRIPAHKRLDAVVTLCYEALARARDPVYGCVGHLFALQQQVMNL 105 7***********************9989*************************************************************** PP DUF260 91 kaelallkee 100 +ael +++++ Phvul.010G084900.1 106 QAELTYVQAR 115 *****99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.48 | 14 | 116 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-38 | 15 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MDYGGKIGGS ERGGPCGACK FLRRKCVKGC IFAPYFDSDQ GTAHFAAVHK VFGASNASKL 60 LMRIPAHKRL DAVVTLCYEA LARARDPVYG CVGHLFALQQ QVMNLQAELT YVQARLATMQ 120 RMPMAVAPLL HPQSSSPQTL PSSDQLASNV DMQSVPIMHY DPLQPHSASL ELSSILFNQS 180 DQQVEDRELQ ALAREFVTKY LPGVRFQQSN SP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-37 | 13 | 116 | 9 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-37 | 13 | 116 | 9 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.010G084900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 1e-148 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007134896.1 | 1e-157 | hypothetical protein PHAVU_010G084900g | ||||
Swissprot | O81322 | 5e-71 | LBD31_ARATH; LOB domain-containing protein 31 | ||||
TrEMBL | V7ANJ9 | 1e-156 | V7ANJ9_PHAVU; Uncharacterized protein | ||||
STRING | XP_007134896.1 | 1e-157 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1771 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00210.1 | 3e-71 | LOB domain-containing protein 31 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.010G084900.1 |
Entrez Gene | 18617827 |