PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G073400.1
Common NamePHAVU_010G073400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 159aa    MW: 18141.5 Da    PI: 7.2514
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G073400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.71.3e-104283955
                        HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                         r RR+ri ++f  L++++P        K++ +++Le+A++Y+k+L+
  Phvul.010G073400.1 42 ARERRHRISDRFKILQSMVPGG-----SKMDTVSMLEEAIQYVKYLK 83
                        699*****************95.....5*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.3643382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.07E-143892IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.47E-133986No hitNo description
SMARTSM003531.6E-123988IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-123986IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-84282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MDYIHPASSA GSSSKINRSK EKKGAKKCKG VRLSTDPQSV AARERRHRIS DRFKILQSMV  60
PGGSKMDTVS MLEEAIQYVK YLKTQIWLHQ TMINFFDDND SLSPIYLSDC YFPSDPSEHF  120
ISPQQDPQLD HSMHNFPHLP QLQCSFHGED TTYFDMPL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G073400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007134758.11e-116hypothetical protein PHAVU_010G073400g
TrEMBLV7AMC21e-115V7AMC2_PHAVU; Uncharacterized protein
STRINGXP_007134758.11e-116(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71672846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.13e-33APRATAXIN-like