PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.010G016300.1 | ||||||||
Common Name | PHAVU_010G016300g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | C2H2 | ||||||||
Protein Properties | Length: 308aa MW: 34290.2 Da PI: 7.0256 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.5 | 0.00022 | 53 | 75 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H Phvul.010G016300.1 53 YSCSFCRREFRSAQALGGHMNVH 75 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.58E-6 | 50 | 79 | No hit | No description |
PROSITE profile | PS50157 | 11.219 | 53 | 80 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0098 | 53 | 75 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 55 | 75 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MEQGQCWTKR KYSLSSSLSS PANPSYGDSW EEQAFAEDAA NSLGGCVWPP RSYSCSFCRR 60 EFRSAQALGG HMNVHRRDRA RLKQQPSSPH NEILCHDLQT QLHKPLQSPF ASLDDYLYPS 120 PVCGLAYKKT KPNSYPDFVA SPSSPSHSKA LLAPSLNSGN SREETMIPFY DSTILHKISP 180 VSNSSETWPN LAEDQGLYSC KFHPQADTKK PSKGIIDSRC WGSDDIDGDM SLNSVVYSTH 240 PFLQFESTKE ADHMSCMKRK TDASSSPFSP KSSSVDRNDV QPKMLEFSPS SLEELDLELR 300 LGYRSKV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 1e-12 | 48 | 75 | 2 | 29 | superman protein |
2l1o_A | 1e-12 | 48 | 75 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.010G016300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 0.0 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007134063.1 | 0.0 | hypothetical protein PHAVU_010G016300g | ||||
TrEMBL | V7AKE9 | 0.0 | V7AKE9_PHAVU; Uncharacterized protein | ||||
STRING | XP_007134063.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1776 | 30 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37740.1 | 1e-26 | zinc-finger protein 10 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.010G016300.1 |
Entrez Gene | 18617111 |