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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Phvul.009G253200.1 | ||||||||
| Common Name | PHAVU_009G253200g | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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| Family | ARR-B | ||||||||
| Protein Properties | Length: 673aa MW: 73347.8 Da PI: 6.5565 | ||||||||
| Description | ARR-B family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 88.9 | 4.7e-28 | 207 | 260 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
kpr++W+ eLH++F+ av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
Phvul.009G253200.1 207 KPRVVWSVELHQQFMAAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 260
79*******************.********************************8 PP
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| 2 | Response_reg | 74.3 | 4.7e-25 | 31 | 139 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89
v++vdD+p+ +++l+++l+ y ev+ ++ +e al ll+e++ +D++l D+ mp+mdG++ll+ i e +lp+i+++a + ++ + +
Phvul.009G253200.1 31 VMVVDDDPTCLRILERMLRVCLY-EVTKCKRAEVALSLLRENKngFDIVLSDVHMPDMDGFKLLELIGLEM-DLPVIMMSADDGKSVVMKG 119
89*********************.***************999999**********************6644.8****************** PP
HHTTESEEEESS--HHHHHH CS
Response_reg 90 lkaGakdflsKpfdpeelvk 109
+ Ga d+l Kp+ +e+l +
Phvul.009G253200.1 120 VTHGACDYLIKPVRIEALKN 139
****************9986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PIRSF | PIRSF036392 | 1.4E-173 | 4 | 664 | IPR017053 | Response regulator B-type, plant |
| Gene3D | G3DSA:3.40.50.2300 | 8.7E-40 | 28 | 168 | No hit | No description |
| SuperFamily | SSF52172 | 1.22E-33 | 28 | 149 | IPR011006 | CheY-like superfamily |
| SMART | SM00448 | 1.8E-28 | 29 | 141 | IPR001789 | Signal transduction response regulator, receiver domain |
| PROSITE profile | PS50110 | 41.45 | 30 | 145 | IPR001789 | Signal transduction response regulator, receiver domain |
| Pfam | PF00072 | 7.9E-22 | 31 | 139 | IPR001789 | Signal transduction response regulator, receiver domain |
| CDD | cd00156 | 8.22E-26 | 32 | 145 | No hit | No description |
| SuperFamily | SSF46689 | 5.02E-20 | 204 | 264 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS51294 | 10.888 | 204 | 263 | IPR017930 | Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 9.7E-30 | 206 | 265 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 2.1E-24 | 207 | 260 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 2.4E-7 | 209 | 259 | IPR001005 | SANT/Myb domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 673 aa Download sequence Send to blast |
MNLSSAKGST STSPLKTGDA VSDQFPAGLR VMVVDDDPTC LRILERMLRV CLYEVTKCKR 60 AEVALSLLRE NKNGFDIVLS DVHMPDMDGF KLLELIGLEM DLPVIMMSAD DGKSVVMKGV 120 THGACDYLIK PVRIEALKNI WQHVIRKRKN GLKDVEQSGS VEEGDRVLKG CDDGDYSSSV 180 NEGRGSKKRR DEEEEGDERD DSSTLKKPRV VWSVELHQQF MAAVNQLGID KAVPKKILEL 240 MNVPGLTREN VASHLQKYRL YLRRLSGVSQ QQGSLNNSFL SSQEATFGAT SINGIDLQTL 300 AVAGQLPAQS LAKLQAAALG RTTAKAGVPM PLSDQKNIFS FENPRLRFAE GSLHHLSNSK 360 PINLLHGIPT NMEPKQLVNL HQSTQTLGNL NMRVNAPAAQ NNPLLMQMAQ SQPRGQMLSE 420 NADSHVARFP SSLVQPTVQN GISNGVLGNR ITGTTNLTTA YNTVPQNSSL LSFPMSQTNE 480 MSLGSFPLRS TPGITSIPAK GMFHEQGASG IKGPGGFVPS YDMFNELHHQ KSHDWDLTNT 540 GITYDSSQHA NPLQGNVDVS PSVLVHQGFP CMQQSVQTRD TTSIGKPMFS TGEGIHPGIV 600 QNVGQHLNNL VGNSVRVKAE TFHDPSSQIN NLFSDQYGQE DLVTAFLKQQ EGVGPSDNEL 660 DFDGYSLDNI PV* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1irz_A | 2e-22 | 206 | 266 | 4 | 64 | ARR10-B |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Regulates SHY2 by binding to its promoter (PubMed:19039136). Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). {ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:11691951, ECO:0000269|PubMed:17363254, ECO:0000269|PubMed:19039136}. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Phvul.009G253200.1 |
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000269|PubMed:20605455}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_007138963.1 | 0.0 | hypothetical protein PHAVU_009G253200g | ||||
| Swissprot | Q940D0 | 0.0 | ARR1_ARATH; Two-component response regulator ARR1 | ||||
| TrEMBL | V7AZ79 | 0.0 | V7AZ79_PHAVU; Two-component response regulator | ||||
| STRING | XP_007138963.1 | 0.0 | (Phaseolus vulgaris) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF3958 | 34 | 58 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G16857.2 | 1e-176 | response regulator 1 | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | Phvul.009G253200.1 |
| Entrez Gene | 18621280 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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