PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.009G186000.1 | ||||||||
Common Name | PHAVU_009G186000g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | NAC | ||||||||
Protein Properties | Length: 355aa MW: 39758.8 Da PI: 8.5588 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 181.4 | 2.2e-56 | 16 | 142 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeel+++yL +kv+++++++ ++i evd++++ePw+Lp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke Phvul.009G186000.1 16 LPPGFRFHPTDEELISHYLYRKVTETHFSA-RAIGEVDLNRSEPWELPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKE 105 79**************************99.89***************888999************************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +++ +++lvg+kktLvfykgrapkgektdWvmheyrle Phvul.009G186000.1 106 IFR-GKSLVGMKKTLVFYKGRAPKGEKTDWVMHEYRLE 142 ***.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.22E-63 | 13 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.783 | 16 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-29 | 17 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MENVSVLCKE DLQMDLPPGF RFHPTDEELI SHYLYRKVTE THFSARAIGE VDLNRSEPWE 60 LPWKAKMGEK EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT GKDKEIFRGK SLVGMKKTLV 120 FYKGRAPKGE KTDWVMHEYR LEGKFSVHNL PKTAKSEWVI CRVFQKSSGV KKTHISGIMM 180 LDSFGNELAS SALPPLTDSS PSIGNTKALS VTEQPYVPCF SNPIDVPRAI FDSLSNTNIN 240 NNNTLYGVSS NHSFYSTQGV HLPAPPTLPS PGSSNHYLIR SFLHNHGKGS HLRNGFESER 300 EMVSVSQETG VSADVNAETS SVVSHLEMSK RLYENQNNAI GSAAPADLAS LWNY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-55 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-55 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-55 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-55 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-55 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swm_B | 5e-55 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swm_C | 5e-55 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swm_D | 5e-55 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_A | 5e-55 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_B | 5e-55 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_C | 5e-55 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_D | 5e-55 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
4dul_A | 4e-55 | 13 | 172 | 14 | 171 | NAC domain-containing protein 19 |
4dul_B | 4e-55 | 13 | 172 | 14 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.009G186000.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ028773 | 0.0 | DQ028773.1 Glycine max NAC domain protein NAC5 (NAC5) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007138169.1 | 0.0 | hypothetical protein PHAVU_009G186000g | ||||
Swissprot | Q9FLJ2 | 1e-137 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | V7AZY0 | 0.0 | V7AZY0_PHAVU; Uncharacterized protein | ||||
STRING | XP_007138169.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF409 | 34 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 1e-139 | NAC domain containing protein 100 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.009G186000.1 |
Entrez Gene | 18620586 |
Publications ? help Back to Top | |||
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