PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Phvul.009G163200.1 | ||||||||
Common Name | PHAVU_009G163200g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 238aa MW: 26946.1 Da PI: 7.8856 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 154.7 | 4e-48 | 14 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrF+Ptdeelv +yLk k+ + +l++ ++i+e+++ k++PwdLp ++ +eke yfFs+++ ky++g+r nr+t+sgyWkatg+dk+ Phvul.009G163200.1 14 LPPGFRFQPTDEELVFQYLKCKIFSCQLPA-SIIPEINVSKYDPWDLPGNC-DDEKERYFFSSKEAKYRNGNRMNRTTNSGYWKATGSDKK 102 79****************************.89***************554.46789********************************** PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 v s+ ++ gl+ktLvfy+g++p+g++t+W+mheyrl Phvul.009G163200.1 103 VSSSiNNGISGLRKTLVFYEGKSPNGSRTEWLMHEYRL 140 **9988889***************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.84E-56 | 10 | 165 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.489 | 14 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.0E-25 | 15 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 238 aa Download sequence Send to blast |
MERLNFIKNG VSSLPPGFRF QPTDEELVFQ YLKCKIFSCQ LPASIIPEIN VSKYDPWDLP 60 GNCDDEKERY FFSSKEAKYR NGNRMNRTTN SGYWKATGSD KKVSSSINNG ISGLRKTLVF 120 YEGKSPNGSR TEWLMHEYRL LSVETSASKP IQEIGDWVLC RIFIKKRSIE SDNNTTPPRQ 180 KNAVTNNVEV AEPRFFEFFS VHHNSVPAPI HSSTLSSCSS SNNVEEVSSP NHEQTSD* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-48 | 13 | 170 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-48 | 13 | 170 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-48 | 13 | 170 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-48 | 13 | 170 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
4dul_A | 8e-48 | 13 | 170 | 16 | 170 | NAC domain-containing protein 19 |
4dul_B | 8e-48 | 13 | 170 | 16 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Phvul.009G163200.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT092682 | 1e-167 | BT092682.1 Soybean clone JCVI-FLGm-16A18 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007137875.1 | 1e-177 | hypothetical protein PHAVU_009G163200g | ||||
Swissprot | Q9FY93 | 3e-73 | NAC83_ARATH; NAC domain-containing protein 83 | ||||
TrEMBL | V7AWB9 | 1e-175 | V7AWB9_PHAVU; Uncharacterized protein | ||||
STRING | XP_007137875.1 | 1e-176 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF704 | 34 | 139 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G13180.1 | 7e-75 | NAC domain containing protein 83 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Phvul.009G163200.1 |
Entrez Gene | 18620349 |
Publications ? help Back to Top | |||
---|---|---|---|
|