PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G077100.1
Common NamePHAVU_009G077100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family TALE
Protein Properties Length: 562aa    MW: 62509.4 Da    PI: 6.2787
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G077100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox261.6e-084805181854
                         HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         +F++  ++yp+ +e+  LA k gLt +qV++WF N R +
  Phvul.009G077100.1 480 MFQNflHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVR 518
                         5887779******************************88 PP
2BELL74.22.1e-24353421271
                BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 
                         r+  ++kka+Ll+ll+ Vd+rY+q+ ++++tvis+F+a+++l++ ++++++Al++iS  ++ L+++i++ 
  Phvul.009G077100.1 353 RRVAESKKAQLLTLLQLVDNRYSQCLDEIHTVISAFHAATELDP-QIHAHFALQTISVLYKDLRERISNY 421
                         566799**************************************.**********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.4E-23276420IPR006563POX domain
PfamPF075261.8E-25282419IPR006563POX domain
PROSITE profilePS5007111.078459522IPR001356Homeobox domain
SMARTSM003896.9E-6462526IPR001356Homeobox domain
CDDcd000865.92E-11462523No hitNo description
SuperFamilySSF466892.31E-15464531IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.4E-26465528IPR009057Homeodomain-like
PfamPF059208.9E-15479518IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MERDIYIAPL DISGRGATVI DEISQHSTSN PLIQCYSLDL NNQSHVMNGI SMLSGEQVEP  60
ISNVHADACF INQSIIADSS PLVTSRRKSI VGDASNPMEN TEFLEHLVGG VPLTPASLAA  120
ILAARIGLEE DLENSAALPP SICSTGALEV FFNNLQGTSN PLSATFEDCD YNEVPSKWNA  180
NKFHKAPEIG GTCEPYSSIA NLDPNEWTTS NVANMASYAY CSSNFSKELS LSLATSTTAG  240
QYSEVTCSNM TPCMNGTISC SSSRQLSMNL GGNKYVQFSP EVLESRYLLG IQEILAQIAR  300
YSFENLKQLN YSAPGNRAGG NRSASAFPPM RNILTDHNAN SIYESHAESP LQRRVAESKK  360
AQLLTLLQLV DNRYSQCLDE IHTVISAFHA ATELDPQIHA HFALQTISVL YKDLRERISN  420
YILAMGSSFN KSCAEENEWS IETSFLQKQW ALQQLKRKDQ LWRPQRGLPE RSVSVLRAWM  480
FQNFLHPYPK DAEKHLLAVK SGLTRSQVSN WFINARVRLW KPMIEEMYAE MNKRKACRNE  540
EGIQNNHGNR IGMSNQRFNV N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-14468526563Homeobox protein Meis2
3k2a_B1e-14468526563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G077100.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007136819.10.0hypothetical protein PHAVU_009G077100g
RefseqXP_007136820.10.0hypothetical protein PHAVU_009G077100g
RefseqXP_007136821.10.0hypothetical protein PHAVU_009G077100g
SwissprotP487311e-103ATH1_ARATH; Homeobox protein ATH1
TrEMBLV7AU240.0V7AU24_PHAVU; Uncharacterized protein
STRINGXP_007136819.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59393249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.11e-106homeobox gene 1
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]