PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G081800.1
Common NamePHAVU_008G081800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WRKY
Protein Properties Length: 305aa    MW: 34339.2 Da    PI: 5.9333
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G081800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.21.2e-26121180259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversaedpkvveitYegeHnhe 59 
                         dDg++WrKYGqKe+ +++fpr+YYrCt++  gC++kk+v+r +edp + +++Y+g+H+++
  Phvul.008G081800.1 121 DDGHQWRKYGQKEILNAKFPRNYYRCTHRdqGCSAKKQVQRVEEDPILYKTIYHGDHTCK 180
                         8***************************9999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-28109181IPR003657WRKY domain
PROSITE profilePS5081120.771115177IPR003657WRKY domain
SuperFamilySSF1182901.03E-25116180IPR003657WRKY domain
SMARTSM007741.1E-35120181IPR003657WRKY domain
PfamPF031061.4E-25121180IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MDNLGVSTSR MKAIEELLRG RDSAKQLSSV INGSGENGSS ANPKKLVKEV LMSFTKSLLL  60
LNSDPTSESH DVSSVQVWDS LKQEDSQESN CKNSTVKSRR GCYKRSRMEQ LREMESEAPI  120
DDGHQWRKYG QKEILNAKFP RNYYRCTHRD QGCSAKKQVQ RVEEDPILYK TIYHGDHTCK  180
SLENPQIILD PVSPSSSSMF LSFNSLENPV FNSSFPTPSK QECPFLSSSF TSSVKRECKE  240
EVIPPSTSSN DYLISSDLTF DDSPRHVTLS SSTLDSEYKG VDISDVLYDS AQLDHVFEPF  300
LQFR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-20120180869OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G081800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007140073.10.0hypothetical protein PHAVU_008G081800g
TrEMBLV7B2D50.0V7B2D5_PHAVU; Uncharacterized protein
STRINGXP_007140073.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19953486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.19e-36WRKY DNA-binding protein 70