PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.008G054800.1 | ||||||||
Common Name | PHAVU_008G054800g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | C3H | ||||||||
Protein Properties | Length: 427aa MW: 46803.6 Da PI: 8.1253 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.6 | 1.5e-11 | 39 | 65 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p Phvul.008G054800.1 39 PGEPDCSYYIRTGLCRFGATCRFNHPP 65 5789*********************97 PP | |||||||
2 | zf-CCCH | 38 | 2.7e-12 | 86 | 110 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++C+F+H++ Phvul.008G054800.1 86 QPECQYYLKTGTCKFGATCRFHHPR 110 799********************96 PP | |||||||
3 | zf-CCCH | 37.4 | 4.2e-12 | 132 | 156 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ Phvul.008G054800.1 132 EPECAYYLRTGQCKFGNTCKFHHPQ 156 799********************97 PP | |||||||
4 | zf-CCCH | 38.4 | 2.1e-12 | 288 | 313 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+f+++tG Ck+G+ C+F+H++ Phvul.008G054800.1 288 DQPDCQFYMKTGDCKFGAVCRFHHPR 313 6899********************96 PP | |||||||
5 | zf-CCCH | 38.1 | 2.5e-12 | 333 | 359 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ Phvul.008G054800.1 333 PGEPLCVFYSRYGICKFGPSCKFDHPM 359 589**********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.2E-4 | 38 | 65 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.976 | 39 | 66 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.3E-8 | 40 | 65 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.27E-5 | 43 | 66 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.0E-4 | 44 | 64 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.1E-6 | 83 | 110 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.253 | 83 | 111 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-9 | 86 | 110 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-6 | 87 | 112 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.7E-5 | 89 | 110 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-5 | 129 | 156 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.619 | 129 | 157 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.8E-10 | 132 | 156 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-6 | 132 | 157 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.6E-4 | 135 | 155 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.718 | 286 | 314 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.7E-5 | 286 | 313 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.0E-9 | 288 | 313 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-5 | 289 | 315 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-4 | 292 | 314 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-7 | 332 | 359 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.821 | 332 | 360 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.6E-9 | 334 | 359 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-5 | 335 | 359 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.7E-4 | 337 | 357 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0017148 | Biological Process | negative regulation of translation | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0048027 | Molecular Function | mRNA 5'-UTR binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 427 aa Download sequence Send to blast |
MEFDAAIPVS REHLPQDAMW QINLRSSETM ESGPYPEHPG EPDCSYYIRT GLCRFGATCR 60 FNHPPNRKLA IAAARMKGEF PERIGQPECQ YYLKTGTCKF GATCRFHHPR DKAGIAGRVA 120 LNILGYPLRP NEPECAYYLR TGQCKFGNTC KFHHPQPSNM VLSMRSSPVY PTVQSPTTPG 180 QQSYATGITN WPSSSYIPSP RWQSPSSYAP LILPQGMVSV PGWSAYSGQM GSDSSQQTMG 240 NGQSYGTNRQ SEPTNAGSQG AYSQFRSGSV PVGFYALPRE NIFPERPDQP DCQFYMKTGD 300 CKFGAVCRFH HPRERMIPAP DCVLSPIGLP LRPGEPLCVF YSRYGICKFG PSCKFDHPMG 360 VFTYNISASP SADAPGRRLL GSSSGTSALN LSSEGLIESG SANPRRLSLS ETRQIPSGDD 420 NIDEEG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.008G054800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU624138 | 0.0 | EU624138.1 Medicago sativa zinc finger protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007139732.1 | 0.0 | hypothetical protein PHAVU_008G054800g | ||||
Swissprot | Q9SWF9 | 0.0 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | V7B5J7 | 0.0 | V7B5J7_PHAVU; Uncharacterized protein | ||||
STRING | XP_007139732.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5321 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 0.0 | zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.008G054800.1 |
Entrez Gene | 18621939 |