PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.007G195100.1 | ||||||||
Common Name | PHAVU_007G195100g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | LBD | ||||||||
Protein Properties | Length: 215aa MW: 23630.7 Da PI: 5.6881 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 130.1 | 9.5e-41 | 19 | 120 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C aCk+lrrkCa+dC++apyf+++q p++fa++hk+FGasnv+kll ++p+++r +am +++yeA+ar+rdPvyG+v++i++lqqq+++l Phvul.007G195100.1 19 PCGACKFLRRKCAADCIFAPYFCSQQgPARFAAIHKVFGASNVSKLLLRIPDNDRFEAMVTIAYEAQARIRDPVYGCVSHIFALQQQVASL 109 7***********************9999*************************************************************** PP DUF260 91 kaelallkeel 101 +ael+++k++l Phvul.007G195100.1 110 QAELVQMKAQL 120 *****999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.556 | 18 | 120 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.3E-39 | 19 | 117 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MASATTANDA ASASSFGSPC GACKFLRRKC AADCIFAPYF CSQQGPARFA AIHKVFGASN 60 VSKLLLRIPD NDRFEAMVTI AYEAQARIRD PVYGCVSHIF ALQQQVASLQ AELVQMKAQL 120 DQNQMVCRNL ENHWSENVGQ PLNPLCPTSM NNPISPQSSL DSIDYSSSMN DGMSMQDVQS 180 GEDFSFQACS WKRSYNNDLG ELQELALRMM RKCD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-36 | 10 | 113 | 2 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-36 | 10 | 113 | 2 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:19717544, PubMed:22974309). Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19 (PubMed:17259263). Functions in the initiation and emergence of lateral roots, in conjunction with LBD18, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:26059335}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.007G195100.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:23749813}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 1e-132 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007144925.1 | 1e-160 | hypothetical protein PHAVU_007G195100g | ||||
Swissprot | Q9SLB7 | 1e-70 | LBD16_ARATH; LOB domain-containing protein 16 | ||||
TrEMBL | V7BG98 | 1e-158 | V7BG98_PHAVU; Uncharacterized protein | ||||
STRING | XP_007144925.1 | 1e-159 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4509 | 33 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42430.1 | 4e-65 | lateral organ boundaries-domain 16 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.007G195100.1 |
Entrez Gene | 18626414 |