PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G099800.1
Common NamePHAVU_007G099800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 529aa    MW: 58075.6 Da    PI: 9.7198
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G099800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.7e-056688123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        + C+ C+k F r  nL+ H r H
  Phvul.007G099800.1 66 FICEVCNKGFQREQNLQLHRRGH 88
                        89*******************88 PP
2zf-C2H212.70.0004142164123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC++C+k +  +s+ k H +t+
  Phvul.007G099800.1 142 WKCEKCSKKYAVQSDWKAHSKTC 164
                         58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.8E-66588IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.57E-76588No hitNo description
PfamPF121712.5E-56688IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.00526688IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.996688IPR007087Zinc finger, C2H2
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SMARTSM00355130107137IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.0E-5130163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.57E-7137162No hitNo description
SMARTSM00355140142162IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MAAASSSTPF SGTREESPQI TTHHQPSTVA PITVPQKKRR NQPGTPNPDA EVIKLSPKTL  60
MATNRFICEV CNKGFQREQN LQLHRRGHNL PWKLKQKSTK EQKRKVYLCP EPTCVHHDPS  120
RALGDLTGIK KHYSRKHGEK KWKCEKCSKK YAVQSDWKAH SKTCGTREYR CDCGTLFSRR  180
DSFITHRAFC DALAHESARY PSSSNPLGTH LFGTNHTSLT LSQVGTQLSQ VQNQNQTVTN  240
IGAALKFEHL IPPLNQSSFG HSPQSMPSSA FFMNNNTNQT LFEEHQSQQG QLFSNKQLHG  300
LMQLTALDGN TNNSNSSSVA APNSNLFNLS FFPSSNSTST IIPDQFNNIS GSDQGTTPPP  360
LFVNNNPAVS DHVGSSFSSL FGDSIENVSS PHMSATVLLQ KASQMGSTTT TSGSSLLRGM  420
SSNGSKAENG HHHHHNLQGL MNSIANGNTS LFRNMQGNEN NLSGFHNVDE SNHKLPQNLN  480
NVNFGGSDKL TLDFLGVGGM VRNMNGGFSQ REQLQQQQRV MGTEFFGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-36138205370Zinc finger protein JACKDAW
5b3h_F2e-36138205370Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G099800.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007143766.10.0hypothetical protein PHAVU_007G099800g
RefseqXP_007143767.10.0hypothetical protein PHAVU_007G099800g
SwissprotQ8GYC11e-137IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBLV7BH180.0V7BH18_PHAVU; Uncharacterized protein
STRINGXP_007143766.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15363397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14580.21e-105C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]