PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.007G064300.1 | ||||||||
Common Name | PHAVU_007G064300g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | bHLH | ||||||||
Protein Properties | Length: 246aa MW: 27793.5 Da PI: 8.4924 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.6 | 1.7e-11 | 74 | 126 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ h e+Er+RR+++ + + Lr+llP ++ ++K s ++ ++v+YI++Lq Phvul.007G064300.1 74 KKMVHREIERKRRQEMATLHASLRSLLPLSF--IKGKRSISDQMSETVNYINHLQ 126 6889*************************65..*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.68E-8 | 71 | 130 | No hit | No description |
SuperFamily | SSF47459 | 4.58E-12 | 72 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.103 | 73 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.2E-10 | 74 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-8 | 74 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0028 | 79 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MFPLQRGNEL VIQFSNGLQP QHKISKDLLL DDHNIDNSPL VAYSDKKLRT SHPNKLFYAP 60 ETSHENSTQE ESAKKMVHRE IERKRRQEMA TLHASLRSLL PLSFIKGKRS ISDQMSETVN 120 YINHLQKNIK ELSDKRDKLK KKLPINSTLE SRQNKHESSG FTVHQNSSGA VGIEISGFSE 180 EGVSLSKLLE LVLEEGLEVV CCLSTKVNGR LLHSLQCEVE NSDSVDLSEL RRKFSNVIAS 240 FRVSE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 81 | 86 | ERKRRQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.007G064300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031116 | 0.0 | KT031116.1 Glycine max clone HN_CCL_215 bHLH transcription factor (Glyma10g38630.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007143341.1 | 1e-178 | hypothetical protein PHAVU_007G064300g | ||||
TrEMBL | V7BCN5 | 1e-177 | V7BCN5_PHAVU; Uncharacterized protein | ||||
STRING | XP_007143341.1 | 1e-178 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF792 | 33 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25400.1 | 2e-24 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.007G064300.1 |
Entrez Gene | 18625063 |