PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G025500.1
Common NamePHAVU_007G025500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bZIP
Protein Properties Length: 463aa    MW: 51461.5 Da    PI: 6.4491
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G025500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.51.9e-10174205435
                         XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekv 35 
                          k  rr+++NReAAr+sR+RKka++++Le+  
  Phvul.007G025500.1 174 QKTVRRLAQNREAARKSRLRKKAYVQQLENSR 205
                         67889************************854 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003388.8E-9171242IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.243173217IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.11E-7175218No hitNo description
PfamPF001702.1E-7175212IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.0E-7177212No hitNo description
PROSITE patternPS000360178193IPR004827Basic-leucine zipper domain
PfamPF141448.8E-30260334IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MQSFNPTESE STSPLYSHSS FIHRGNDTNR NPTRFSDIQH SFRQHDAVDL SSSSVFGAKS  60
NNMAVVASNL QCGTFNTNLG GAEFASTVVG CVETESQHIY QRGNSSATMP MGNQYVEKWA  120
DESQHTEDTC TDIDTDDKNQ CFSTVSWGNG VGDGALVVVD SQDQTKIKAK PEDQKTVRRL  180
AQNREAARKS RLRKKAYVQQ LENSRVRLAQ LEQDLQRARQ QGVHIASGVT GDRGHSVVGN  240
GALAFDMDYA RWVDEHQRLI NDLRSAINSR MGDNELHLLV DGVMAHYDDL FRLKSIGAKA  300
DVFHILSGMW KTPAERCFIW LGGFRSSELL KIVRNQLEPL TEEQLMGIYN LQQSSQQAED  360
ALSQGMEALQ QSLSETLSSS CQGPSGSGNV AEYMGQMAIA LGKLATLESF LHQADLLRQQ  420
TLQQMRRILT TFQAARALLV INDYVSRLRA LNSLWLACPR EY*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G025500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-113AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007142889.10.0hypothetical protein PHAVU_007G025500g
SwissprotQ415581e-158HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLV7BDA60.0V7BDA6_PHAVU; Uncharacterized protein
STRINGXP_007142889.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60223149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68640.11e-143bZIP family protein