PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G020900.1
Common NamePHAVU_007G020900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 560aa    MW: 60374.5 Da    PI: 9.6255
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G020900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.22.9e-057193123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        + C+ C+k F r  nL+ H r H
  Phvul.007G020900.1 71 FICEVCNKGFQREQNLQLHRRGH 93
                        89*******************88 PP
2zf-C2H211.90.00067147169123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC +C+k +  +s+ k H +t+
  Phvul.007G020900.1 147 WKCDKCSKKYAVQSDWKAHSKTC 169
                         58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.2E-67093IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.88E-77093No hitNo description
PfamPF121712.7E-57193IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.997193IPR007087Zinc finger, C2H2
SMARTSM003550.00527193IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
SMARTSM00355130112142IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.2E-5135168IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.88E-7142167No hitNo description
SMARTSM00355150147167IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MATSSSSASL FGFREDDQNQ MKQQHSLTPS SSTTPAAPPP QKKKRNQPGT PYPDAEVIAL  60
SPKTLMATNR FICEVCNKGF QREQNLQLHR RGHNLPWKLK QKTTKEPKRK VYLCPEPTCV  120
HHDPSRALGD LTGIKKHYSR KHGEKKWKCD KCSKKYAVQS DWKAHSKTCG TREYRCDCGT  180
LFSRRDSFIT HRAFCDALAQ ESARQPPNLG AAIGTHLFGT AANTIPLNLS QVASHISNIQ  240
DPTTQPTELL RLGGAAAART GQFDHLLGSP FRPSQQQQPF FIEPNQNYHP DQQQQQQGLL  300
QNKPFQQGLM QLSDHLTNNT NSPFNLPFLS ATTNASFSEN FNNSSSNNNN EGTNFFTTSS  360
APSLFSNNAV SANANANALS HMSATALLQK AAQMGASSSN STASLLKSFG SASSSSGSKS  420
EQHRVNAAGY GGGMFGGNVN EQSNSNLQDL MNSFAVSGNS SIFEGGFEAY DHNNREGKVH  480
AMSGSSSIGG SDRLTRDFLG VGQIVRGMSG SGGVPHREHH GFNLSSLEAA DQRNNSNSNN  540
NNSAAPSGQA FGGGGGNFQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-35143204364Zinc finger protein JACKDAW
5b3h_F2e-35143204364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00255DAPTransfer from AT2G02070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G020900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007142834.10.0hypothetical protein PHAVU_007G020900g
SwissprotQ9ZUL31e-134IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLV7BD540.0V7BD54_PHAVU; Uncharacterized protein
STRINGXP_007142834.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15363397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-104indeterminate(ID)-domain 5
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]