PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G183700.1
Common NamePHAVU_005G183700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family AP2
Protein Properties Length: 322aa    MW: 36157.5 Da    PI: 9.7383
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G183700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.13.3e-1655114155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  s+n+   k+ ++++lg ++ ++ Aa+a++ a++k++g
  Phvul.005G183700.1  55 SPYRGVTRHRWTGRYEAHLWDkTSWNQsqnKKgRQVYLGAYDDEDAAARAYDLAALKYWG 114
                         68*******************777777766447**********99*************98 PP
2AP254.62.7e-17157208155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+++GV +++++grW+A+I  +     +k+ +lg++gt+eeAa a++ a+ +++g
  Phvul.005G183700.1 157 SKFRGVARHHQNGRWEARIGRVLG---NKYLYLGTYGTEEEAAMAYDLAAIEYRG 208
                         79****************988422...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.24E-1655124IPR016177DNA-binding domain
PROSITE profilePS5103219.91556122IPR001471AP2/ERF domain
SMARTSM003809.2E-2756128IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-1557123IPR001471AP2/ERF domain
PRINTSPR003674.4E-65768IPR001471AP2/ERF domain
PfamPF008471.3E-1157114IPR001471AP2/ERF domain
PRINTSPR003674.4E-6104124IPR001471AP2/ERF domain
CDDcd000182.87E-23157215No hitNo description
PfamPF008478.4E-13157208IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-18157218IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.2E-17158217IPR001471AP2/ERF domain
PROSITE profilePS5103218.07158216IPR001471AP2/ERF domain
SMARTSM003803.4E-26158222IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MRNKHFTHSL RSSSTSNRFL LMSSNGLNVE SGIVKKMKMK KKKKLPRDTP LPRTSPYRGV  60
TRHRWTGRYE AHLWDKTSWN QSQNKKGRQV YLGAYDDEDA AARAYDLAAL KYWGSETLLN  120
FPVSNYEEQL KEMEDQSKEE YIGSLRRKSS GFSRGVSKFR GVARHHQNGR WEARIGRVLG  180
NKYLYLGTYG TEEEAAMAYD LAAIEYRGLN AVTNFHLSRY MKGLRPKDQP QAHHASPSPS  240
PSPTTPSGSE SCNATVTLGP PQPPPPPTSN PPPPPPRTFP EDIQTFFETQ DSAGIYTDTD  300
DIIFGDLTSI ASPIFHCDLN A*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G183700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-108AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007150824.10.0hypothetical protein PHAVU_005G183700g
SwissprotQ94AN41e-107AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLV7C0D20.0V7C0D2_PHAVU; Uncharacterized protein
STRINGXP_007150824.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.22e-96AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]