PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G148400.1
Common NamePHAVU_005G148400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family Trihelix
Protein Properties Length: 449aa    MW: 50793.9 Da    PI: 5.9171
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G148400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix68.61.2e-21116210183
            trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstc 79 
                         +Wt++ v++Li++++ ++++   +            +kk++W+ vsk m ++g+++sp+qC++k+++lnkryk+++++ +++t ++++++ 
  Phvul.005G148400.1 116 KWTDNVVRLLITVVSCVGDDGTIAGmdghkrksgvlQKKGKWKTVSKIMISKGCHVSPQQCEDKFNDLNKRYKRLNDILGRGTcCQVVENP 206
                         7**************666666644333344555677**********************************************846777666 PP

            trihelix  80 pyfd 83 
                         ++ d
  Phvul.005G148400.1 207 ALMD 210
                         6655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.4E-18114239No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MNGSGLGGGF LSGPSGGILD LESSFHRHQQ TQLGHPSITG QQQLNIMSGL ESDHPIGLIE  60
VKNLNAALNF GKGKAIAPSD SNELSDEDEP SYAEEGNCEN LDGGKGKKGS PWQRMKWTDN  120
VVRLLITVVS CVGDDGTIAG MDGHKRKSGV LQKKGKWKTV SKIMISKGCH VSPQQCEDKF  180
NDLNKRYKRL NDILGRGTCC QVVENPALMD SIPNLSAKMK DDVRKILSSK HLFYKEMCAY  240
HNGQRIPNCH ELDLQGYSME HGRDSTRDNN GSEDEDENNN DSEEDELDDD ININAHEDGG  300
RMQELCDRNI LSEEDGHFGP QASRMDKFEI EMARVFQDPT KSLREQREWI KIQMLQLQEQ  360
NISYQAQTLE LEKQRLKWLR YCSKKDRELE RLRLENKRMK LENEHRILKL KQKELEVDFS  420
TSEMSLDPAS IGINRPQGRE HVSLGRQQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G148400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007150380.10.0hypothetical protein PHAVU_005G148400g
TrEMBLV7BWQ60.0V7BWQ6_PHAVU; Uncharacterized protein
STRINGXP_007150380.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105463240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.12e-83sequence-specific DNA binding transcription factors