PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G119300.1
Common NamePHAVU_005G119300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family TALE
Protein Properties Length: 709aa    MW: 76855.3 Da    PI: 9.21
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G119300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.55.2e-093984351954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yp+ ++++ LAk++gL  +qV++WF N R +
  Phvul.005G119300.1 398 FEHflHPYPKDSDKAMLAKQTGLARSQVSNWFINARVR 435
                         664459******************************88 PP
2BELL121.92.6e-39262333172
                BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         +rqelq+kk+kL+++l+eV++rY+qy++q+q+v+ssFe++ag+g+ak+Yt+lAlk+iS++FrcLkdai+ qi
  Phvul.005G119300.1 262 QRQELQMKKSKLVNMLDEVEQRYRQYHHQMQIVVSSFEQAAGYGAAKSYTALALKTISKQFRCLKDAISAQI 333
                         69********************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.9E-72189331IPR006563POX domain
PfamPF075265.6E-50195330IPR006563POX domain
PROSITE profilePS5007111.807376439IPR001356Homeobox domain
CDDcd000862.36E-11379440No hitNo description
SMARTSM003898.6E-9379443IPR001356Homeobox domain
SuperFamilySSF466892.74E-16380446IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.5E-28382445IPR009057Homeodomain-like
PfamPF059207.1E-18396435IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MATYFHGSTS EIQSSADGLQ TLYLMNPSYV PYADAPHHPT LLVNPNATNA LNLASLTHAP  60
PVSPAANHHQ QVIHGVSNVL GSGNSDEHAH TRQSLFGENI AAFHGFSGGA SSTAPRVPYN  120
LWGSGVDQPG TPSSSSGGGG GFRRPSQQGL SLSLSSQQTN FRSVSGELEI AGQGHVAGTG  180
NSPTSAASTG VSGLILGSKY LKATQELLDE VVNVGKGIYK DEKFSEKVKA NKESTNSGAG  240
AGSSGGGENS AGKQMVELST AQRQELQMKK SKLVNMLDEV EQRYRQYHHQ MQIVVSSFEQ  300
AAGYGAAKSY TALALKTISK QFRCLKDAIS AQIKATSKTL GEDDCLGVKV EGSRLRYVDH  360
HLRQQRALQQ LGMIQPNAWR PQRGLPERAV SILRAWLFEH FLHPYPKDSD KAMLAKQTGL  420
ARSQVSNWFI NARVRLWKPM VEEMYLEEMK DHEQANGSEN SRSKELSKEL GSTANVAPES  480
GAIKLDNLQS KQDSFNNQNT SPNEISTNSS MSPIGGSLQS HSGFHLAGSS DVQRSPNKPR  540
SLEMQNSPSS ILSVDMEMKH NGEHANTREA NTKFSIERHH KDGYPLMSGN TNQGGGFGAF  600
AMEDIGNRFN VTTEQLASRF HGNGVSLTLG LPHNENLSIS GTQHGFLSQN IHLGRRLEMG  660
TTGNEFCAIN TPPSSHSGTT YESIDIQNRK RKNQKHSEAW QVGNWRRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A2e-16385442158Homeobox protein Meis1
4xrs_B2e-16385442158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G119300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007150021.10.0hypothetical protein PHAVU_005G119300g
TrEMBLV7BYA10.0V7BYA1_PHAVU; Uncharacterized protein
STRINGXP_007150021.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16273492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-121BEL1-like homeodomain 1