PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.005G080200.1 | ||||||||
Common Name | PHAVU_005G080200g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | WRKY | ||||||||
Protein Properties | Length: 302aa MW: 34667 Da PI: 6.4194 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 74.9 | 1e-23 | 132 | 193 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy WrKYGqK+ ++++ rsYYrCt++ gCp++k+v+r +edp + +tY g+Hn++ Phvul.005G080200.1 132 MEDGYIWRKYGQKMTMNTKYLRSYYRCTHKydqGCPATKQVQRIQEDPPLYRTTYYGHHNCK 193 58***************************99999**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.5E-25 | 120 | 193 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.85 | 127 | 195 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.18E-24 | 128 | 194 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.1E-36 | 132 | 194 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-23 | 133 | 193 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MENQPSNGRK AMEEELNKGR YTANQLLQIL VHKSNTRHRD AEVEGLVLPF VEDLVRKVLR 60 SFSNTLLLLN THSDIFDEVV MPTTINDVSS SLKCPNLEDK DGVCKGSINA KRRRVCRKRN 120 APTWEKNSSH LMEDGYIWRK YGQKMTMNTK YLRSYYRCTH KYDQGCPATK QVQRIQEDPP 180 LYRTTYYGHH NCKISLGPEI ILEPASSSDS SMFLSFSTTF PTKEEYQFSS SLFSSTKQEP 240 MEGIPDDCGM HNQLPSSDYH LLDDYELDFN CLRYDTMQSM LSSTESVQFD KVYGSGMDFD 300 G* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 5e-20 | 132 | 193 | 8 | 69 | OsWRKY45 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 110 | 114 | KRRRV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.005G080200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC254324 | 0.0 | AC254324.1 Phaseolus vulgaris cultivar G19833 clone PV_GBb015-K06, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007149557.1 | 0.0 | hypothetical protein PHAVU_005G080200g | ||||
TrEMBL | V7BYA0 | 0.0 | V7BYA0_PHAVU; Uncharacterized protein | ||||
STRING | XP_007149557.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12638 | 11 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56400.1 | 6e-30 | WRKY DNA-binding protein 70 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.005G080200.1 |
Entrez Gene | 18630425 |