PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.004G079200.1 | ||||||||
Common Name | PHAVU_004G079200g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | GATA | ||||||||
Protein Properties | Length: 254aa MW: 28620.7 Da PI: 8.7558 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 52.9 | 5e-17 | 183 | 217 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C + Tp+WR gp g+ktLCnaCG++y++ +l Phvul.004G079200.1 183 CTHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRL 217 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.0E-15 | 177 | 231 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 9.03E-15 | 179 | 241 | No hit | No description |
PROSITE profile | PS50114 | 11.095 | 181 | 213 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.8E-13 | 181 | 215 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.24E-11 | 182 | 229 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 183 | 208 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 7.2E-15 | 183 | 217 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MDMDVCRNVS VSSELPTLDD LFSHQNMEVD FGMEWLSVFV EDCFSSKPSC LLAPTGVQTT 60 STSSKPSSTM QRPQQSYCHL QNFVVPGKAR SKRKRLSAPR TKHTLSTWSH NFSSEVLCSD 120 PPLLKQAYWL ADSELIVPKK KDEQEVKVEI VVRKEKLGEC CDEVEVNNSS NNNNGQHPIP 180 RRCTHCLSQR TPQWRAGPLG PKTLCNACGV RYKSGRLLPE YRPAKSPTFV SYLHSNSHKR 240 VMEMRMSVLS SEK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.004G079200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007151835.1 | 0.0 | hypothetical protein PHAVU_004G079200g | ||||
TrEMBL | V7C126 | 0.0 | V7C126_PHAVU; Uncharacterized protein | ||||
STRING | XP_007151835.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8487 | 24 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32890.1 | 5e-41 | GATA transcription factor 9 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.004G079200.1 |
Entrez Gene | 18632372 |