PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.003G273600.1 | ||||||||
Common Name | PHAVU_003G273600g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | C2H2 | ||||||||
Protein Properties | Length: 415aa MW: 45250.3 Da PI: 7.8613 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.3 | 2.7e-05 | 39 | 61 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C k Fs+ L H+r H Phvul.003G273600.1 39 FTCHICEKGFSSGKALGGHMRIH 61 89*******************99 PP | |||||||
2 | zf-C2H2 | 22 | 4.3e-07 | 93 | 114 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ CgksFs+ +L H+r+H Phvul.003G273600.1 93 VCSVCGKSFSSLKSLFGHMRSH 114 6********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 4.0E-5 | 37 | 61 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.87E-6 | 37 | 64 | No hit | No description |
Pfam | PF13912 | 2.0E-7 | 39 | 61 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.344 | 39 | 66 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0072 | 39 | 61 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 41 | 61 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0025 | 92 | 114 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.427 | 92 | 119 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.3E-6 | 93 | 116 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.24E-7 | 93 | 114 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 94 | 114 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 4.3E-9 | 94 | 115 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.24E-7 | 257 | 281 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 415 aa Download sequence Send to blast |
MEENQEAQHR RENRGSVPGE GEGLGGNGGG VHDNGIRSFT CHICEKGFSS GKALGGHMRI 60 HNLSRKQVQK EKQGGGDVKS KAAKWVLVDG NPVCSVCGKS FSSLKSLFGH MRSHTEKAKR 120 GIQSVTPIVG ASSNSTSSST LSDDFAVDLC GVLRGWSVTA KRGRRSPSCS KSNSGLEDGD 180 EIEPRMQEAA YELMMLARGS PRWEQEVGAD PIQEHPCRKR GNEEELLQPV FGNSDDVKNK 240 KRNRKKVKLT ELASTEEGNR FSSCRKCNTT FQSHQSWKDH LCSLQNSKNI QPQSDGKEEH 300 HAKTNRKTGT ETVLEGSGLE ATKCEVLNKT FSTVEAIGEH KRSDWTSMAE AESAAQATSS 360 NVETGQNCSK VFSFDLNEIP AMDVEEGVQS DLFIPANILT SSSYVPHPKK NLCH* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.003G273600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007156283.1 | 0.0 | hypothetical protein PHAVU_003G273600g | ||||
TrEMBL | V7CDL9 | 0.0 | V7CDL9_PHAVU; Uncharacterized protein | ||||
STRING | XP_007156283.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9737 | 24 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26940.1 | 3e-14 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.003G273600.1 |
Entrez Gene | 18636229 |