PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.003G246700.1 | ||||||||
Common Name | PHAVU_003G246700g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | LBD | ||||||||
Protein Properties | Length: 274aa MW: 30406.4 Da PI: 6.4116 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 136.8 | 8e-43 | 7 | 106 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrrkC+++Cv+apyfp ++p++f++vh++FGasnv+kll++l+ +r+da++sl+yeAear+rdPvyG+vg+i+ lqq+l+q + Phvul.003G246700.1 7 PCAACKLLRRKCTQECVFAPYFPPDNPQRFECVHRVFGASNVSKLLNELSVAQRDDAVKSLAYEAEARLRDPVYGCVGLISLLQQRLRQIQ 97 7****************************************************************************************** PP DUF260 92 aelallkee 100 el+ +k+e Phvul.003G246700.1 98 MELHIAKKE 106 ****99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.115 | 6 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.0E-42 | 7 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MSSMNSPCAA CKLLRRKCTQ ECVFAPYFPP DNPQRFECVH RVFGASNVSK LLNELSVAQR 60 DDAVKSLAYE AEARLRDPVY GCVGLISLLQ QRLRQIQMEL HIAKKEFSTY VSPQTMQILL 120 ANPGMVPPAE IVGPPPHQPM FNHGGNNMVP QQILVGHGGG QTVVRDPQQQ DFQEAQQIIL 180 ATREQQQMFR NYEHQVYGGF EPGNGGFGNQ AELLSPSLAH GNFGNVGAYQ MQQQGEQHPI 240 EAQLLLSPQQ GQPHQQQQCE SEDGRNVLDF SIK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-44 | 6 | 123 | 10 | 127 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-44 | 6 | 123 | 10 | 127 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.003G246700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007155957.1 | 0.0 | hypothetical protein PHAVU_003G246700g | ||||
TrEMBL | V7CGA4 | 0.0 | V7CGA4_PHAVU; Uncharacterized protein | ||||
STRING | XP_007155957.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2353 | 34 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 3e-51 | ASYMMETRIC LEAVES 2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.003G246700.1 |
Entrez Gene | 18635952 |