PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G185100.1
Common NamePHAVU_003G185100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 628aa    MW: 70846.7 Da    PI: 4.9972
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G185100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.0014299320122
                         EEETTTTEEESSHHHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirt 22 
                         + C  Cgk F++  + k+H ++
  Phvul.003G185100.1 299 FYCVLCGKKFKSEKQWKNHEQS 320
                         78*****************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465651.7E-22881IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1104.3E-23879IPR001623DnaJ domain
SMARTSM002711.8E-211072IPR001623DnaJ domain
CDDcd062573.98E-171169IPR001623DnaJ domain
PROSITE profilePS5007618.9421180IPR001623DnaJ domain
PfamPF002261.2E-201277IPR001623DnaJ domain
PRINTSPR006252.1E-131331IPR001623DnaJ domain
PRINTSPR006252.1E-133146IPR001623DnaJ domain
PRINTSPR006252.1E-135272IPR001623DnaJ domain
PROSITE patternPS0063605776IPR018253DnaJ domain, conserved site
SuperFamilySSF576671.96E-14288339No hitNo description
SMARTSM004514.5E-7296330IPR003604Zinc finger, U1-type
SMARTSM003550.27299323IPR015880Zinc finger, C2H2-like
PfamPF121718.9E-11299324IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS501579.037299328IPR007087Zinc finger, C2H2
PROSITE patternPS000280301323IPR007087Zinc finger, C2H2
SMARTSM003555596620IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.538596621IPR007087Zinc finger, C2H2
PROSITE patternPS000280598620IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MASSSSLAKR CHYEVLDLSQ DCAPEEIRSA YRRLALQRHP DKLVKSGLSQ EEATAQFQEL  60
QHAYEVLSDP KERAWYDSHR SQILFSDPNS LSKSLVPDLF SFFSNTVYSG YSDTGKGFYK  120
VYSDVFDKIL ANEINFARKM GLGVDAVRQA PVMGNLDSPY AQVTAFYGYW LGFCTVMDFC  180
WVDEYDVMAG PNRKSRRLME EENNKVRRKA RREYNDTVRR LGDFVKKRDK RVIDMKVKRS  240
AEMERKKEEE RERKKRLEQE RKERAMAYEE PDWAKVEVEE VVEEWVEEGD EEKKNDKEFY  300
CVLCGKKFKS EKQWKNHEQS KKHKERVAEF RDSIGDEEDL EEGKEGLGSE EDGVGVNGDG  360
GNGVGVNGVG DLETRIRDGL NVEEGVIRNG VELDDEDGGG GDGDDDDDDD EFSEASHVKE  420
GEDANGSVNL DDNGNQDDDN DENGVLEAMV AGHKNRKPRA STHKSKASIV PSQIETENDE  480
VGPMEYNNRK STKKKRGAKK ERGRKNWEES QEPAASCNDE NINGNGNDNS HAEESCSQHF  540
VENEDNSMGN EQQVSRGNKI SNQSADKKGA GKDTKIKAKI SSKGRKAKVT SKNIGNTCDA  600
CGEEFESRNK LHRHLGDSGH ATILRGR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G185100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007155239.10.0hypothetical protein PHAVU_003G185100g
SwissprotQ9C9110.0JJJ1_ARATH; DNAJ protein JJJ1 homolog
TrEMBLV7CD040.0V7CD04_PHAVU; Uncharacterized protein
STRINGXP_007155239.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65511922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.11e-155DNAJ heat shock N-terminal domain-containing protein