PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.003G139500.1 | ||||||||
Common Name | PHAVU_003G139500g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | WRKY | ||||||||
Protein Properties | Length: 321aa MW: 34837.5 Da PI: 10.5329 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.8 | 7.9e-32 | 243 | 300 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+++dp+++++tYegeH+h+ Phvul.003G139500.1 243 DEYSWRKYGQKPIKGSPYPRGYYKCSSVrGCPARKHVERAQDDPNMLIVTYEGEHRHP 300 9*************************988****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 8.9E-17 | 195 | 239 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 1.1E-33 | 229 | 302 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.881 | 236 | 302 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.89E-27 | 240 | 302 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.6E-38 | 241 | 301 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.6E-27 | 243 | 300 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MPLDLEALPK IRMEEQTAIE EAASAGLKSM EHLIRVLSSQ IPSSSSAASS SSTHHRRLNL 60 NHLDCTEITD FTVSKFKQVI NLLNRTGHAR FRRAPSHPSP SPSLPSPPQP HTQKPALHFA 120 NPKVKSIPNP NPSSTDFSVS QYSKTKDTTF TISPPISTTT SSFMSSITAD GSVSDGKIGP 180 AILSSGKPPL SSSHRKRCHD ATLSAGKASS SANCHCSKRR KSRLKRMIRV PAVSSKIADI 240 PVDEYSWRKY GQKPIKGSPY PRGYYKCSSV RGCPARKHVE RAQDDPNMLI VTYEGEHRHP 300 QPRLPETAAT AAVAFGAQAV * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-22 | 229 | 302 | 2 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269|PubMed:26433201}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.003G139500.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:26433201}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT098154 | 0.0 | BT098154.1 Soybean clone JCVI-FLGm-12I3 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007154689.1 | 0.0 | hypothetical protein PHAVU_003G139500g | ||||
Swissprot | Q9SV15 | 1e-101 | WRK11_ARATH; Probable WRKY transcription factor 11 | ||||
TrEMBL | V7CBH2 | 0.0 | V7CBH2_PHAVU; Uncharacterized protein | ||||
STRING | XP_007154689.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1314 | 34 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31550.1 | 3e-92 | WRKY DNA-binding protein 11 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.003G139500.1 |
Entrez Gene | 18634860 |