PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G008300.1
Common NamePHAVU_003G008300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 515aa    MW: 56967.4 Da    PI: 9.515
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G008300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.6e-057395123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        + C+ C+k F r  nL+ H r H
  Phvul.003G008300.1 73 FICEVCNKGFQREQNLQLHRRGH 95
                        89*******************88 PP
2zf-C2H212.10.00061149171123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC +C+k +  +s+ k H +t+
  Phvul.003G008300.1 149 WKCDKCSKKYAVQSDWKAHSKTC 171
                         58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.6E-67295IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.17E-77295No hitNo description
PfamPF121712.5E-57395IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.00527395IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.997395IPR007087Zinc finger, C2H2
PROSITE patternPS0002807595IPR007087Zinc finger, C2H2
SMARTSM00355160114144IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.9E-4137170IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.17E-7144169No hitNo description
SMARTSM00355150149169IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MAAPFSAASL FGIREEDQNQ MKQQHSSTTT PSSSSTPAAP PPQKKRRNQP GTPNPDAEVI  60
ALSPKTLMAT NRFICEVCNK GFQREQNLQL HRRGHNLPWK LKQKSNKEAK RKVYLCPEPT  120
CVHHDPSRAL GDLTGIKKHF SRKHGEKKWK CDKCSKKYAV QSDWKAHSKT CGTREYRCDC  180
GTLFSRRDSF ITHRAFCDAF AQESAREPPN LSSAIGNQLY GNSNMSLGLS QIPSIHDQNS  240
QSSDLLRFGG APRTGQFDHI LPPNMPSPFR PSSHQTMQMQ NPPFFIQEPN QNQNQNYHDH  300
QQGLISNKPF QGMIQLSDLN NNTPSNLFNL PFLSNRNHTP NYSEEHHFTT TEPSNFFTEG  360
TMIETSSATA PSLFSTSLQS STNMSHMSAT ALLQKAAQMG AASSSNNNNS ASSLLRSLAS  420
KSEHRPLISA ANYSSILNSS VQEMMNLPGF EAYDHAMNKE PKLSVGGSNR LTRDFLGVAQ  480
QQQQQRGFNL SSLESETNNA ALSGQSFGGG GNFQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-34145206364Zinc finger protein JACKDAW
5b3h_F7e-34145206364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G008300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007153119.10.0hypothetical protein PHAVU_003G008300g
SwissprotQ9ZUL31e-133IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLV7C6W50.0V7C6W5_PHAVU; Uncharacterized protein
STRINGXP_007153119.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15363397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-118indeterminate(ID)-domain 5
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]