PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.002G126400.1

Common Name

PHAVU_002G126400g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

Trihelix

Protein Properties

Length: 310aa MW: 36335.8 Da PI: 8.8171

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.002G126400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	89.6	3.4e-28	48	129	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++qe+++ i++r e+e+++ ++k++k+lWe vs+kmrergf+rsp+qCk+kw+nl +ryk ++++ ++ s++cp+f++l+ Phvul.002G126400.1 48 QWSQQETREFIAIRAELERDFTASKRNKTLWEVVSSKMRERGFRRSPEQCKCKWKNLVNRYKGKETSDPEH----SRQCPFFEELH 129 7**************************************************************999986....899****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	1.4E-4	45	107	IPR001005	SANT/Myb domain
CDD	cd12203	1.39E-26	47	112	No hit	No description
Pfam	PF13837	1.5E-23	47	130	No hit	No description
PROSITE profile	PS50090	7.654	49	105	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MFGGGGEDAL AARLGMVTPS LLNPATPLVM SGEVSAVVRE ERAPAQPQWS QQETREFIAI 60 RAELERDFTA SKRNKTLWEV VSSKMRERGF RRSPEQCKCK WKNLVNRYKG KETSDPEHSR 120 QCPFFEELHA VFTQRAHNMQ RLLLESETRS AQTKKGVKRS SGDRSSEELS EDEDEVEYDS 180 EEEKPSRSNT RKKKVDKVGI DKSSSRAYNS SHAVSSSTSS IQEMLKEFFQ HQLRMEMKWR 240 EMMERRAHER QLFEQEWRQS MEKLERERLI IEQAWREREE QRRMREESRA EKRDALLTTL 300 LNKLINEST*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ebi_A	1e-14	49	115	7	73	DNA binding protein GT-1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.002G126400.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	0.0	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007158125.1	0.0	hypothetical protein PHAVU_002G126400g
TrEMBL	V7CJ09	0.0	V7CJ09_PHAVU; Uncharacterized protein
STRING	XP_007158125.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1781	33	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38250.1	9e-39	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Phvul.002G126400.1
Entrez Gene	18637775