PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G156400.1
Common NamePHAVU_001G156400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 293aa    MW: 31190.3 Da    PI: 6.3692
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G156400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.37.5e-10141185554
                         HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                         h+++Er RR+ri +++  L+el+P+ +      K + a++L + v+Y+k L
  Phvul.001G156400.1 141 HSIAERLRRERIAERIRALQELVPSvN------KTDRAAMLDEIVDYVKFL 185
                         99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.27E-15134195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.12136185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-15138195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-7141185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-11142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MANNPSDAPA DDFLEQILGL PTFASADSGL SAADVGLSGT TSPTSMMLQL NSADANAHLT  60
GAAFHAPVYQ LGLSLDQGKG GFMKPEEASA SGKRYRDDVV DGRAKNVFHG QPMPPTMPAA  120
PHPPAIRPRV RARRGQATDP HSIAERLRRE RIAERIRALQ ELVPSVNKTD RAAMLDEIVD  180
YVKFLRLQVK VLSMSRLGGA GAVAPLVTDI PLSSVEEEGG EGARNRPAWD KCSNDGTERQ  240
VAKLMEENVG AAMQFLQSKA LCIMPISLAS AIYQSQPPDS SSIVKPETNP PS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145150RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G156400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-145AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007162488.10.0hypothetical protein PHAVU_001G156400g
SwissprotO227681e-129UNE12_ARATH; Transcription factor UNE12
TrEMBLV7CWC10.0V7CWC1_PHAVU; Uncharacterized protein
STRINGXP_007162488.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54493253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-108bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]