PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G134900.1
Common NamePHAVU_001G134900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 287aa    MW: 31721.8 Da    PI: 7.8206
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G134900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.6e-05223244323
                         ETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                         Cp Cg  Fs+k +L+ H ++ H
  Phvul.001G134900.1 223 CPQCGVKFSSKTSLVDHVQKvH 244
                         ******************9988 PP
2zf-C2H213.20.00026259280323
                         ETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                         Cp+C++ F ++ +L  H  + H
  Phvul.001G134900.1 259 CPKCSRGFVDPVSLAEHVERdH 280
                         *****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183101.0E-12652No hitNo description
PROSITE profilePS510397.4451059IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.103.8E-101053IPR000058Zinc finger, AN1-type
PfamPF014282.1E-131351IPR000058Zinc finger, AN1-type
SMARTSM001545.2E-41352IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.106.0E-1091149IPR000058Zinc finger, AN1-type
SuperFamilySSF1183105.49E-893143No hitNo description
PROSITE profilePS510397.69398151IPR000058Zinc finger, AN1-type
PfamPF014286.4E-8101141IPR000058Zinc finger, AN1-type
SMARTSM001540.13101142IPR000058Zinc finger, AN1-type
PROSITE profilePS501579.951221249IPR007087Zinc finger, C2H2
SMARTSM003550.0039221244IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.8E-5222276No hitNo description
PROSITE patternPS000280223244IPR007087Zinc finger, C2H2
SMARTSM0035514257280IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280259280IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MGTPEFPNLG KHCSVSDCRQ LDFLPFTCDR CNQIYCLEHR GYIEHKCTKP NKEDVTVVIC  60
PLCAKGVRLI PDQDPNITWD HHVNIDCDPS NYEKVTKKRK CPAPGCREVL VFSNTIKCRD  120
CLEDHCLKHR FGSDHKCSGP KKLETSFSFM GFFNTTKQEE TKPNLTSTAS SNWTSSFLHV  180
ASNIRASAEA SMSKFNQVWL SARDGVGQSN GSGNRNDDQG EHCPQCGVKF SSKTSLVDHV  240
QKVHESNGKQ LGVKKIDACP KCSRGFVDPV SLAEHVERDH GGGCGA*
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G134900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007162230.10.0hypothetical protein PHAVU_001G134900g
SwissprotQ8VZ421e-108SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLV7CVU20.0V7CVU2_PHAVU; Uncharacterized protein
STRINGXP_007162230.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58643351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-110C2H2 family protein