PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G109500.1
Common NamePHAVU_001G109500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GATA
Protein Properties Length: 272aa    MW: 30131 Da    PI: 7.4431
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G109500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.92.5e-17198232135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++C +  Tp+WR gp g+ktLCnaCG++y++ +l
  Phvul.001G109500.1 198 CTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRL 232
                         *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.147192228IPR000679Zinc finger, GATA-type
SMARTSM004012.5E-14192246IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-15193256No hitNo description
Gene3DG3DSA:3.30.50.101.2E-13196230IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.87E-12197244No hitNo description
PfamPF003205.1E-15198232IPR000679Zinc finger, GATA-type
PROSITE patternPS003440198223IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MNMNMCQNVS VSSECHQEQV FAPSCSSSLD DLFSAQNTEV DVELEWLSEF VEDCFSSPPS  60
FVLGASGVKT TITSTDPSSG TLKRAQQHES PLQNFAVPGK ARSKRKRLSA PRTKDPLSIW  120
SHHLNPQNEA LSSDPPLLKQ AYWLADSELI MPKPKEEQEV SKVDGEVVEK GVVIIRKESF  180
GDSELEGSNG QQPMPRRCTH CLAQRTPQWR AGPLGPKTLC NACGVRYKSG RLLPEYRPAK  240
SPTFVSYLHS NSHKKVMEMR MSVYSSISSE Q*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G109500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0935010.0BT093501.1 Soybean clone JCVI-FLGm-14K19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007161927.10.0hypothetical protein PHAVU_001G109500g
TrEMBLV7CYD30.0V7CYD3_PHAVU; Uncharacterized protein
STRINGXP_007161927.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84872444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.16e-44GATA transcription factor 9