PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.001G009700.1 | ||||||||
Common Name | PHAVU_001G009700g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | DBB | ||||||||
Protein Properties | Length: 306aa MW: 34020.4 Da PI: 6.9715 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.1 | 3.1e-07 | 44 | 83 | 5 | 38 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ ++++ ++ fC+ ++ lC+ C +H+ H+ Phvul.001G009700.1 44 QCDVCNKHDASVFCTADEAALCDGCDHRIHHAnklaskHQ 83 7****************************74446777776 PP | |||||||
2 | zf-B_box | 26.3 | 1.6e-08 | 92 | 133 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 + + C+ ++e ++ fC++++ lC++C +++H+ H Phvul.001G009700.1 92 QHPLCDICQERRAFTFCQQDRAILCRECDVSIHSAneltlkH 133 5689*****************************655666666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.495 | 40 | 87 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.6E-8 | 40 | 87 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.84E-5 | 43 | 87 | No hit | No description |
SMART | SM00336 | 5.6E-13 | 91 | 138 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.096 | 91 | 138 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 6.4E-7 | 92 | 134 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.19E-9 | 94 | 138 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MHLNHLALFI TITQLNPTLP LFSFFSKLHF LLTQNLQLQT MKIQCDVCNK HDASVFCTAD 60 EAALCDGCDH RIHHANKLAS KHQRFSLLRP KQHPLCDICQ ERRAFTFCQQ DRAILCRECD 120 VSIHSANELT LKHDRFLLTG LKLSASSSSQ ETTSTSNSAP DSLLQVSHQK TTPLSSSTLS 180 KIGVEAAPST SASSISEYLI ETLPGWQVED FLDSYSVPFG FSKSDEVLPR FDGETEAHLG 240 SFSTENMGIW VPQAPPPLLS YSQMDKGIGQ SESNMKGSRS RLKDDNFTVP QISPQSNSKR 300 GRFLW* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.001G009700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 1e-121 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007160700.1 | 0.0 | hypothetical protein PHAVU_001G009700g | ||||
Swissprot | Q9LQZ7 | 1e-76 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | V7CRG1 | 0.0 | V7CRG1_PHAVU; Uncharacterized protein | ||||
STRING | XP_007160700.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1448 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 4e-66 | salt tolerance homolog2 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.001G009700.1 |
Entrez Gene | 18640007 |