PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf04918g00007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family Trihelix
Protein Properties Length: 587aa    MW: 64730.4 Da    PI: 9.8782
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf04918g00007.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix92.34.9e-2969152186
                  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                               rW++qe+laL+++r+em+  +r+++lk+plWeevs+k+++ g++rs+k+Ckek+en+ k+++++k+g+ +++  + +t+++f+ l
  Peinf101Scf04918g00007.1  69 RWPRQETLALLRIRSEMDVVFRDSSLKGPLWEEVSRKLADLGYHRSAKKCKEKFENVYKYHRRTKDGRASKS--DGKTYRFFEAL 151
                               8********************************************************************974..5567*****99 PP

                  trihelix  86 e 86 
                               e
  Peinf101Scf04918g00007.1 152 E 152
                               8 PP

2trihelix102.43.6e-32466551187
                  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                               rW+k+e+ aLi++r+ ++ +++++  k+plWee+s+ mr  g++r++k+Ckekwen+nk+ykk+ke++kkr +e+s+tcpyf+ql
  Peinf101Scf04918g00007.1 466 RWPKEEIEALIRLRTCLDLKYQENVPKGPLWEEISAGMRNLGYNRNAKRCKEKWENINKYYKKVKESNKKR-PEDSKTCPYFHQL 549
                               8*********************************************************************8.99*********** PP

                  trihelix  86 ea 87 
                               ea
  Peinf101Scf04918g00007.1 550 EA 551
                               85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.1262126IPR017877Myb-like domain
SMARTSM007170.002366128IPR001005SANT/Myb domain
PfamPF138371.0E-1868153No hitNo description
CDDcd122031.98E-2568133No hitNo description
PROSITE profilePS500907.457459523IPR017877Myb-like domain
SMARTSM007170.0015463525IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-4464522IPR009057Homeodomain-like
CDDcd122033.42E-29465530No hitNo description
PfamPF138372.5E-22465552No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MLGVSAGLIN TTSADGAAST QAAPQQPPPL AATVAESGGS SEGGGGGGGD MAVGGGFNEE  60
GERNSGGNRW PRQETLALLR IRSEMDVVFR DSSLKGPLWE EVSRKLADLG YHRSAKKCKE  120
KFENVYKYHR RTKDGRASKS DGKTYRFFEA LEAFETNPSH SLPPPPLAAT PITMAMPMRG  180
NATMNNPPMP MSQTTVSSTQ TPFTISQNTV PTAATPIVNH PLNNNVSPLP VSSQPSQPPP  240
SAQPNITLNQ INRAQGNTSF LSNSTSSSST SSDEDIQRRH GKKRKWKDFF EGLMKDVIEK  300
QEELQKKFLE TLEKRERERL VREETWRVQE MARMNREHDL LVQERSMAAA KDATIIAFLQ  360
KITGQQNIQI PNITTNTSPT QVQLQLPEKP LVAPPQPQPQ KQTPPPPATA VSLPMPVPAP  420
AIAVSLPMAV PTPVPTQALV PVPARTMEVA KLDNGAENFT QASSSRWPKE EIEALIRLRT  480
CLDLKYQENV PKGPLWEEIS AGMRNLGYNR NAKRCKEKWE NINKYYKKVK ESNKKRPEDS  540
KTCPYFHQLE ALYKEKAKTE VVPITTTAFG LKPENNPSMV PNISPAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276284QRRHGKKRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00244DAPTransfer from AT1G76890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009594163.10.0PREDICTED: trihelix transcription factor GT-2-like
TrEMBLA0A1S4DN330.0A0A1S4DN33_TOBAC; trihelix transcription factor GT-2-like
STRINGXP_009594163.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24022459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.22e-46Trihelix family protein