PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf04918g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | Trihelix | ||||||||
Protein Properties | Length: 587aa MW: 64730.4 Da PI: 9.8782 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 92.3 | 4.9e-29 | 69 | 152 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 rW++qe+laL+++r+em+ +r+++lk+plWeevs+k+++ g++rs+k+Ckek+en+ k+++++k+g+ +++ + +t+++f+ l Peinf101Scf04918g00007.1 69 RWPRQETLALLRIRSEMDVVFRDSSLKGPLWEEVSRKLADLGYHRSAKKCKEKFENVYKYHRRTKDGRASKS--DGKTYRFFEAL 151 8********************************************************************974..5567*****99 PP trihelix 86 e 86 e Peinf101Scf04918g00007.1 152 E 152 8 PP | |||||||
2 | trihelix | 102.4 | 3.6e-32 | 466 | 551 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 rW+k+e+ aLi++r+ ++ +++++ k+plWee+s+ mr g++r++k+Ckekwen+nk+ykk+ke++kkr +e+s+tcpyf+ql Peinf101Scf04918g00007.1 466 RWPKEEIEALIRLRTCLDLKYQENVPKGPLWEEISAGMRNLGYNRNAKRCKEKWENINKYYKKVKESNKKR-PEDSKTCPYFHQL 549 8*********************************************************************8.99*********** PP trihelix 86 ea 87 ea Peinf101Scf04918g00007.1 550 EA 551 85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.12 | 62 | 126 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0023 | 66 | 128 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 1.0E-18 | 68 | 153 | No hit | No description |
CDD | cd12203 | 1.98E-25 | 68 | 133 | No hit | No description |
PROSITE profile | PS50090 | 7.457 | 459 | 523 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0015 | 463 | 525 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-4 | 464 | 522 | IPR009057 | Homeodomain-like |
CDD | cd12203 | 3.42E-29 | 465 | 530 | No hit | No description |
Pfam | PF13837 | 2.5E-22 | 465 | 552 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 587 aa Download sequence Send to blast |
MLGVSAGLIN TTSADGAAST QAAPQQPPPL AATVAESGGS SEGGGGGGGD MAVGGGFNEE 60 GERNSGGNRW PRQETLALLR IRSEMDVVFR DSSLKGPLWE EVSRKLADLG YHRSAKKCKE 120 KFENVYKYHR RTKDGRASKS DGKTYRFFEA LEAFETNPSH SLPPPPLAAT PITMAMPMRG 180 NATMNNPPMP MSQTTVSSTQ TPFTISQNTV PTAATPIVNH PLNNNVSPLP VSSQPSQPPP 240 SAQPNITLNQ INRAQGNTSF LSNSTSSSST SSDEDIQRRH GKKRKWKDFF EGLMKDVIEK 300 QEELQKKFLE TLEKRERERL VREETWRVQE MARMNREHDL LVQERSMAAA KDATIIAFLQ 360 KITGQQNIQI PNITTNTSPT QVQLQLPEKP LVAPPQPQPQ KQTPPPPATA VSLPMPVPAP 420 AIAVSLPMAV PTPVPTQALV PVPARTMEVA KLDNGAENFT QASSSRWPKE EIEALIRLRT 480 CLDLKYQENV PKGPLWEEIS AGMRNLGYNR NAKRCKEKWE NINKYYKKVK ESNKKRPEDS 540 KTCPYFHQLE ALYKEKAKTE VVPITTTAFG LKPENNPSMV PNISPAS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 276 | 284 | QRRHGKKRK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00244 | DAP | Transfer from AT1G76890 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009594163.1 | 0.0 | PREDICTED: trihelix transcription factor GT-2-like | ||||
TrEMBL | A0A1S4DN33 | 0.0 | A0A1S4DN33_TOBAC; trihelix transcription factor GT-2-like | ||||
STRING | XP_009594163.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2402 | 24 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76890.2 | 2e-46 | Trihelix family protein |