PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf03880g00008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | YABBY | ||||||||
Protein Properties | Length: 187aa MW: 20708.4 Da PI: 8.9041 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 242 | 1.2e-74 | 7 | 165 | 3 | 170 |
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnve 87 +ssse+vCyv+CnfCntilavsvP +s++++vtvrCGhC++llsvn+ q l+ ++hl+++ +++ + + +v Peinf101Scf03880g00008.1 7 YMSSSERVCYVNCNFCNTILAVSVPCSSMMTIVTVRCGHCANLLSVNIGSLLQSLPLQNHLQQRQ--------QSNIADASNKVC 83 6799*******************************************************965544........444444455566 PP YABBY 88 keesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++s+++s++ + + n++e+ pr p irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl Peinf101Scf03880g00008.1 84 GSSSSTNSHRLSPIAANSEEDQPRNSP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 165 6777788888889999********999.9****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 7.3E-75 | 10 | 165 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 7.46E-9 | 106 | 159 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 3.5E-5 | 113 | 159 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MSLDMTYMSS SERVCYVNCN FCNTILAVSV PCSSMMTIVT VRCGHCANLL SVNIGSLLQS 60 LPLQNHLQQR QQSNIADASN KVCGSSSSTN SHRLSPIAAN SEEDQPRNSP IRPPEKRQRV 120 PSAYNRFIKE EIQRIKASNP DISHREAFST AAKNWAHFPH IHFGLNKQAK LDHAVTGEGP 180 QKSIGLY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009611999.1 | 1e-115 | PREDICTED: putative axial regulator YABBY 2 isoform X3 | ||||
Swissprot | Q9XFB0 | 5e-72 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | A0A1J6KYN5 | 1e-114 | A0A1J6KYN5_NICAT; Putative axial regulator yabby 2 | ||||
STRING | XP_009792033.1 | 1e-111 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA381 | 24 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 2e-74 | YABBY family protein |
Publications ? help Back to Top | |||
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