PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01577g02005.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

TALE

Protein Properties

Length: 738aa MW: 81275.5 Da PI: 7.5432

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01577g02005.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.6	2.4e-09	455	492	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Peinf101Scf01577g02005.1 455 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 492 554459******************************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	2.4E-60	240	387	IPR006563	POX domain
Pfam	PF07526	1.1E-47	248	386	IPR006563	POX domain
PROSITE profile	PS50071	12.05	433	496	IPR001356	Homeobox domain
SMART	SM00389	4.2E-10	436	500	IPR001356	Homeobox domain
CDD	cd00086	2.28E-12	436	497	No hit	No description
SuperFamily	SSF46689	5.56E-17	437	503	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.5E-29	439	502	IPR009057	Homeodomain-like
Pfam	PF05920	2.9E-18	453	492	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 738 aa Download sequence Send to blast
FMVPSSTSVA SSTAMYYQGS SEIQADGLQT LYLMNPNYIG YADTQQQQQQ HLQPANMFFL 60 NSAIGGNLPH GQIPSQAHTQ HFVGVPLQAN LQDLSRPSVH EAISASHHGL FQRLWSPADQ 120 NSGGCGVGDG ENGSHSHVQS SSVVSPGSGI GPTTDFTSQL GFQRPGTLVS PTQQHQGLSL 180 SLSPQQHQQQ KQQQMSFRSL PLDHHEISPH ENHQVGILSS SSSPRTNTHS NDNIRASGTS 240 SFSFPNGMIL GSKYLKAAQE LLDEVVNVGQ SIKADGAKDK HKVDNESMPL ASDVVVPTSG 300 SGESSSQKNS VVELTTAQRQ ELQMKKAKLV SMLDEVEQRY RQYHHQMQII VASFEQAAGI 360 GSAKSYTQLA LHTISKQFRC LKDAISGQIK ATSKSLGEEE SLGGKIEGSS RLKFVDHHLR 420 QQRALQQLGM MQPNAWRPQR GLPERAVSVL RAWLFEHFLH PYPKDSDKIM LAKQTGLTRS 480 QVSNWFINAR VRLWKPMVEE MYLEEVKNNQ EQNGLQENIN KNEPNKEVAS KSSVPHDTSK 540 LRKDKQLPSS MQDASPTDIS TSTISTSPNG GSLPGFSFIG SLNMENTAER NTKKPRNDMQ 600 NSSSSILSVD TQMKAAETKR GDNVNDEKQT RESYPLMTAY TMGEFGKFNP EQLATNFQGN 660 GVSLTLGLPP SENLALSGSH QQNFLPNQLG SRLEMGRIDS HYNRMSNPQA SHPTISYENI 720 DFQSGKRYPA QLLPDFVS

Sequence ? help Back to Top

Protein Sequence Length: 738 aa Download sequence Send to blast

FMVPSSTSVA SSTAMYYQGS SEIQADGLQT LYLMNPNYIG YADTQQQQQQ HLQPANMFFL  60
NSAIGGNLPH GQIPSQAHTQ HFVGVPLQAN LQDLSRPSVH EAISASHHGL FQRLWSPADQ  120
NSGGCGVGDG ENGSHSHVQS SSVVSPGSGI GPTTDFTSQL GFQRPGTLVS PTQQHQGLSL  180
SLSPQQHQQQ KQQQMSFRSL PLDHHEISPH ENHQVGILSS SSSPRTNTHS NDNIRASGTS  240
SFSFPNGMIL GSKYLKAAQE LLDEVVNVGQ SIKADGAKDK HKVDNESMPL ASDVVVPTSG  300
SGESSSQKNS VVELTTAQRQ ELQMKKAKLV SMLDEVEQRY RQYHHQMQII VASFEQAAGI  360
GSAKSYTQLA LHTISKQFRC LKDAISGQIK ATSKSLGEEE SLGGKIEGSS RLKFVDHHLR  420
QQRALQQLGM MQPNAWRPQR GLPERAVSVL RAWLFEHFLH PYPKDSDKIM LAKQTGLTRS  480
QVSNWFINAR VRLWKPMVEE MYLEEVKNNQ EQNGLQENIN KNEPNKEVAS KSSVPHDTSK  540
LRKDKQLPSS MQDASPTDIS TSTISTSPNG GSLPGFSFIG SLNMENTAER NTKKPRNDMQ  600
NSSSSILSVD TQMKAAETKR GDNVNDEKQT RESYPLMTAY TMGEFGKFNP EQLATNFQGN  660
GVSLTLGLPP SENLALSGSH QQNFLPNQLG SRLEMGRIDS HYNRMSNPQA SHPTISYENI  720
DFQSGKRYPA QLLPDFVS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	5e-16	442	500	5	63	Homeobox protein Meis2
3k2a_B	5e-16	442	500	5	63	Homeobox protein Meis2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF406698	0.0	AF406698.1 Solanum tuberosum BEL1-related homeotic protein 11 (Bel11) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016436403.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Swissprot	Q9SJ56	1e-124	BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBL	A0A1S3X9F7	0.0	A0A1S3X9F7_TOBAC; BEL1-like homeodomain protein 1
STRING	XP_009629592.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1478	24	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	1e-110	BEL1-like homeodomain 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]