PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peinf101Scf01480g11020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 768aa MW: 84969 Da PI: 5.6372 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 71.6 | 9.9e-23 | 126 | 226 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 f+k+lt sd++++g +++p++ ae++ + +++ ++l+ +d++ + W++++iyr++++r++lt+GW+ F ++++L++gD Peinf101Scf01480g11020.1 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldysM-QPPA-QELMARDLHDQAWTFRHIYRGQPKRHLLTTGWSVFISSKRLCAGD 208 99*****************************954.5444.38******************************************* PP EEEEEE-SSSEE..EEEEE- CS B3 79 fvvFkldgrsefelvvkvfr 98 +v+F +d ++ +l++++ r Peinf101Scf01480g11020.1 209 SVLFIRD--DKSQLLLGIKR 226 *****54..45556888776 PP | |||||||
2 | Auxin_resp | 122.8 | 2.5e-40 | 252 | 334 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras+seFv++++k++ka++ ++s+GmRf+m+fete+s rr++Gt++gvsdldpvrW+ S+Wr+L+ Peinf101Scf01480g11020.1 252 AAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYAQISLGMRFRMMFETEESGIRRYMGTITGVSDLDPVRWKSSQWRNLQ 334 79*******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.58E-44 | 114 | 255 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-40 | 118 | 241 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.94E-18 | 125 | 226 | No hit | No description |
SMART | SM01019 | 5.8E-21 | 126 | 228 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.942 | 126 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.5E-20 | 126 | 227 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.1E-35 | 252 | 334 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 2.11E-9 | 632 | 719 | No hit | No description |
Pfam | PF02309 | 8.0E-10 | 634 | 727 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 26.556 | 641 | 734 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010311 | Biological Process | lateral root formation | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 768 aa Download sequence Send to blast |
MKAPTNGYVP NSGEGERKVM NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE 60 TDGIPSYPNL PSKLICMLHN VTLHADPETD EVYAQMTLQP VNKYDQEALL LSDMGLKQNK 120 QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDYSMQ PPAQELMARD LHDQAWTFRH 180 IYRGQPKRHL LTTGWSVFIS SKRLCAGDSV LFIRDDKSQL LLGIKRANRQ QPALSSSVIS 240 SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVIPLA KYNKAMYAQI SLGMRFRMMF 300 ETEESGIRRY MGTITGVSDL DPVRWKSSQW RNLQVGWDES TAGERPSRVS IWDIEPVVTP 360 FYICPPPFFR PKFPKQTSFP GDESDIENAL KRGMPWIGDE FGAKDAPSSI FPGLSLVQWM 420 SMQQNNHVSV AQSGFPNVLH NGDAPSCSTS PSTNNFQVSP TNFLTRNQGQ AILVEDSIVD 480 PSQEQSKSEF RIKLEQPFSK GPEQSKYKGN GTDNLEAASS TTSYGLDSSG FNFSLPALCG 540 EGDVQSHSRN SLPSAANIDG LTPDALLSRD YDSGKDMQNL FSPFGNTPRD IETELSAAGI 600 SSQPFGVPNM SYKPRCSNDL AVNDTGVLNS NSWTNQTQRM RTYTKVQKRG SVGRTIDVTR 660 YKGYDELRHD LARMFGIEGQ LEDPQRTEWK LVYVDHENDI LLVGDDPWEE FVSCVQSIKV 720 LSSAEVQQMS LDGDLGNVPV PNQASSGTDS GNAWRAHYDD NSAASFNR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-175 | 15 | 355 | 45 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in ethylene responses. Regulates lateral root formation through direct regulation of LBD16 and/or LBD29. Functionally redundant with ARF7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16461383, ECO:0000269|PubMed:17259263}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By auxin and ethylene. {ECO:0000269|PubMed:16461383}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EF121545 | 0.0 | EF121545.1 Solanum lycopersicum auxin response factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016580334.1 | 0.0 | PREDICTED: auxin response factor 19-like isoform X1 | ||||
Refseq | XP_016580335.1 | 0.0 | PREDICTED: auxin response factor 19-like isoform X2 | ||||
Refseq | XP_016580336.1 | 0.0 | PREDICTED: auxin response factor 19-like isoform X3 | ||||
Swissprot | Q8RYC8 | 0.0 | ARFS_ARATH; Auxin response factor 19 | ||||
TrEMBL | A0A103Y265 | 0.0 | A0A103Y265_CYNCS; Auxin response factor | ||||
STRING | Pavir.Db01975.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1302 | 24 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |