PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01380g02033.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family bHLH
Protein Properties Length: 234aa    MW: 25301.4 Da    PI: 6.0266
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01380g02033.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.61.9e-071071471155
                               HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  Peinf101Scf01380g02033.1 107 ARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 147
                               6******************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.03696146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.9E-7104152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-4107147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-13107166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.00E-7108151No hitNo description
Gene3DG3DSA:4.10.280.102.8E-14109165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MDPPIINESS FSAANPSSYT LAEIWPFSTA ASGGGNGDLG GGGGGLGLRM SSFTGLLEAA  60
ANSVDESTLT ERSRRSGGGG GLGKRRDVNL EDECSKHVST SDANDLARRE KISERMKILQ  120
DLVPGCNKVI GKALVLDEII NYIQSLQRQV EFLSMKLEAV NSRMNHSIET FPSKDVSYLV  180
FFMIFHPNHR NRLAPSAFDA TGMIFGAQPP REYAQGAQAE WLHMQVGGSF DRAT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894212e-46KP689421.1 Prunus pseudocerasus isolate Unigene13496 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016563548.11e-97PREDICTED: transcription factor bHLH79
SwissprotQ84T083e-49BH089_ORYSJ; Transcription factor BHLH089
TrEMBLA0A2G2WRJ43e-97A0A2G2WRJ4_CAPBA; Transcription factor bHLH79
STRINGVIT_17s0000g05370.t017e-72(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12872471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.13e-51BIG PETAL P
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]