PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01241g13006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | LBD | ||||||||
Protein Properties | Length: 149aa MW: 16773.4 Da PI: 9.2449 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 114 | 9.9e-36 | 10 | 110 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 aCaaC + + C++dC+lapyfpa+qpk f+nvh+lFG+ n+lkll++l+++ +e am+s++y+A+ar + PvyG+v+ i++l++ Peinf101Scf01241g13006.1 10 ACAACNYRNIPCTSDCPLAPYFPADQPKVFENVHRLFGVINILKLLRQLDPSLKESAMKSVIYQANARHKHPVYGCVADIQNLKS 94 7************************************************************************************ PP DUF260 86 qleqlkaelallkeel 101 ++ ++el++++++l Peinf101Scf01241g13006.1 95 SIQLYEEELQKVRAQL 110 ***********99885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.216 | 9 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.8E-34 | 10 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MSLNGGTSQA CAACNYRNIP CTSDCPLAPY FPADQPKVFE NVHRLFGVIN ILKLLRQLDP 60 SLKESAMKSV IYQANARHKH PVYGCVADIQ NLKSSIQLYE EELQKVRAQL ASYRQKHQLQ 120 GISSSTLADS FRISIERYNT VCPALLRMK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-26 | 6 | 125 | 7 | 125 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-26 | 6 | 125 | 7 | 125 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016482365.1 | 2e-66 | PREDICTED: LOB domain-containing protein 27-like | ||||
Swissprot | Q9STS6 | 4e-40 | LBD27_ARATH; LOB domain-containing protein 27 | ||||
TrEMBL | A0A1S4B091 | 4e-65 | A0A1S4B091_TOBAC; LOB domain-containing protein 27-like | ||||
STRING | XP_009588931.1 | 2e-65 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1449 | 23 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 2e-42 | LOB domain-containing protein 27 |
Publications ? help Back to Top | |||
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