PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01234g01011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | LBD | ||||||||
Protein Properties | Length: 231aa MW: 26061.7 Da PI: 4.7184 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123.4 | 1.1e-38 | 10 | 110 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklq 84 aCaaCk++rrkC+++Cvlapyfpa+qpk f+n+h+lFG+ n++k+lk+l+++e + dam+s+++eAe++ r PvyG+v+ i +l+ Peinf101Scf01234g01011.1 10 ACAACKYQRRKCSSECVLAPYFPANQPKMFQNAHRLFGVCNIMKILKQLDDDEmKGDAMKSIIFEAEMWERFPVYGCVEYICHLR 94 7************************************************888779****************************** PP DUF260 85 qqleqlkaelallkee 100 qql+ + +el+++ ++ Peinf101Scf01234g01011.1 95 QQLQVALEELHYVYAQ 110 *********9998766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.923 | 9 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.7E-37 | 10 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MTVKGGTSPA CAACKYQRRK CSSECVLAPY FPANQPKMFQ NAHRLFGVCN IMKILKQLDD 60 DEMKGDAMKS IIFEAEMWER FPVYGCVEYI CHLRQQLQVA LEELHYVYAQ LAIYREQQQQ 120 LAMQCGVTTP DEIPFVNGMT VGPFLTSDGE SSEGGLKPLL GSDSLLDLTR NNHVTYDHNS 180 LGFGIREERD ISQEYECLIN PFNNIMADDR QSFDELRNAA ACFSLTSAVT L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-24 | 2 | 114 | 4 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-24 | 2 | 114 | 4 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016434883.1 | 1e-128 | PREDICTED: LOB domain-containing protein 2-like | ||||
Swissprot | Q9STS6 | 5e-39 | LBD27_ARATH; LOB domain-containing protein 27 | ||||
TrEMBL | A0A1S3X592 | 1e-126 | A0A1S3X592_TOBAC; LOB domain-containing protein 2-like | ||||
STRING | XP_009612871.1 | 1e-122 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1449 | 23 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 2e-41 | LOB domain-containing protein 27 |
Publications ? help Back to Top | |||
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