PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01192g04049.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

WRKY

Protein Properties

Length: 169aa MW: 19389.8 Da PI: 9.8415

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01192g04049.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103.6	1.1e-32	90	148	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk++++prsYYrCt++gC+vkk+v+r +d+ vv++tYeg H+h+ Peinf101Scf01192g04049.1 90 LDDGYRWRKYGQKAVKNNNNPRSYYRCTHQGCNVKKQVQRLPKDEGVVVTTYEGIHTHP 148 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.3E-34	75	148	IPR003657	WRKY domain
SuperFamily	SSF118290	9.94E-30	82	149	IPR003657	WRKY domain
PROSITE profile	PS50811	29.666	85	150	IPR003657	WRKY domain
SMART	SM00774	5.2E-39	90	149	IPR003657	WRKY domain
Pfam	PF03106	2.1E-26	91	148	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006817	Biological Process	phosphate ion transport
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008134	Molecular Function	transcription factor binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MENHSMHFLG STSCYNSMNE WFSGLKTENI SNSMAQDQQD VSNIKSSNLG SVVSSETTHT 60 KNLSSVKKKG DKKIKKPRIA FQTRSQVDIL DDGYRWRKYG QKAVKNNNNP RSYYRCTHQG 120 CNVKKQVQRL PKDEGVVVTT YEGIHTHPID KPTDNFEQIL HQMHIYPPS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-26	80	149	7	76	Probable WRKY transcription factor 4
2lex_A	2e-26	80	149	7	76	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250\|UniProtKB:Q9SI37}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00325	DAP	Transfer from AT3G01970	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019230591.1	4e-89	PREDICTED: probable WRKY transcription factor 43
Swissprot	Q9S763	1e-49	WRK45_ARATH; Probable WRKY transcription factor 45
TrEMBL	A0A314KIS3	1e-87	A0A314KIS3_NICAT; Putative wrky transcription factor 45
STRING	XP_009630533.1	5e-85	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2204	24	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01970.1	8e-52	WRKY DNA-binding protein 45

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chen L,Xiang S,Chen Y,Li D,Yu D Arabidopsis WRKY45 Interacts with the DELLA Protein RGL1 to Positively Regulate Age-Triggered Leaf Senescence. Mol Plant, 2017. 10(9): p. 1174-1189 [PMID:28735023]