PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01061g09001.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

WRKY

Protein Properties

Length: 264aa MW: 29326.4 Da PI: 9.8573

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01061g09001.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99.9	1.5e-31	197	255	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +d +++++tYegeHnh+ Peinf101Scf01061g09001.1 197 ADEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLDDSSMLIVTYEGEHNHQ 255 69**********************9988**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	1.2E-17	149	194	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	3.2E-34	184	256	IPR003657	WRKY domain
PROSITE profile	PS50811	29.792	191	257	IPR003657	WRKY domain
SuperFamily	SSF118290	2.75E-27	194	256	IPR003657	WRKY domain
SMART	SM00774	8.8E-39	196	256	IPR003657	WRKY domain
Pfam	PF03106	2.0E-27	198	255	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MEEIEEANKA AVETCHRVMS LLSSRPSDQN QYVNLVRETG EAVHKFKKVV TLLNSTLGHA 60 RVRKMNKFRT PLPHNILVEN PSCKTDDHSK ALRLLPLNTP EDSVLEMSAN VKCNLTLGSP 120 ALDVANLDGN AFNLTGASHS ADQSSFQHKR RCSGMGDAGS VKCGSIGRCH CSKKRKHRVK 180 RSIKVPAISN KLADIPADEY SWRKYGQKPI KGSPHPRGYY KCSSMRGCPA RKHVERCLDD 240 SSMLIVTYEG EHNHQRLPSQ SVNA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	4e-22	189	258	7	75	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016565458.1	1e-120	PREDICTED: probable WRKY transcription factor 21
Swissprot	Q93WU6	2e-82	WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBL	A0A2G2Z6M7	1e-145	A0A2G2Z6M7_CAPAN; Putative WRKY transcription factor 21
STRING	PGSC0003DMT400038986	1e-118	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3271	23	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28650.1	7e-85	WRKY DNA-binding protein 74

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]