PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00809g05031.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | C3H | ||||||||
Protein Properties | Length: 407aa MW: 44838.1 Da PI: 9.0499 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.1 | 2.3e-11 | 19 | 44 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++ rtG C++G++C+F+H+p Peinf101Scf00809g05031.1 19 GEPDCSYYIRTGLCRFGSTCRFNHPP 44 6899********************97 PP | |||||||
2 | zf-CCCH | 38.1 | 2.7e-12 | 65 | 88 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C+++++tG+Ck+G+ CkF+H+ Peinf101Scf00809g05031.1 65 QPDCQYYLKTGICKFGAACKFHHP 88 789********************8 PP | |||||||
3 | zf-CCCH | 37.5 | 4.1e-12 | 112 | 135 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C +++rtG+Ck+G++CkF+H++ Peinf101Scf00809g05031.1 112 AECTYYLRTGQCKFGSTCKFHHPQ 135 58********************97 PP | |||||||
4 | zf-CCCH | 36.7 | 7e-12 | 267 | 291 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+f+++tG Ck+G+ C+F+H++ Peinf101Scf00809g05031.1 267 QPECQFYMKTGDCKFGAVCRFHHPR 291 799********************96 PP | |||||||
5 | zf-CCCH | 29.8 | 1e-09 | 312 | 337 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++lC f+ r+ +Ck+G++CkF H++ Peinf101Scf00809g05031.1 312 GEPLCIFYTRYEICKFGPNCKFDHPM 337 689*********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.483 | 17 | 45 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.2E-5 | 17 | 44 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.2E-8 | 19 | 44 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-5 | 22 | 45 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.3E-4 | 23 | 43 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.22 | 62 | 90 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.7E-6 | 62 | 89 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-9 | 65 | 88 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.77E-6 | 66 | 90 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.6E-4 | 68 | 87 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-6 | 108 | 136 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.018 | 108 | 136 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.6E-4 | 110 | 135 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.5E-10 | 112 | 135 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-4 | 114 | 134 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.911 | 264 | 292 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.1E-5 | 264 | 291 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-5 | 267 | 294 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-8 | 267 | 291 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.2E-5 | 270 | 292 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.85 | 310 | 338 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.3E-4 | 310 | 337 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-7 | 312 | 337 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-5 | 314 | 337 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 407 aa Download sequence Send to blast |
MNVRSRESME SGPYPIREGE PDCSYYIRTG LCRFGSTCRF NHPPNRKLVL AEASIKGEYP 60 ERIGQPDCQY YLKTGICKFG AACKFHHPGE KAGIAGRVSL NVLGYPLRMN DAECTYYLRT 120 GQCKFGSTCK FHHPQPSNMI VSLRGSPVYP PVASATTPGQ LAYPLSRASL FSATRWQGPS 180 SYAPLLVPQG AVTVPGFSYS GRVGSASSFE GQQQETAGNN QVYGSSRSCE KATMGWEGMN 240 SSYRVAPLPL GYYPIQRENL LPERVGQPEC QFYMKTGDCK FGAVCRFHHP RERLLPPLDC 300 LLSPIGLPLR SGEPLCIFYT RYEICKFGPN CKFDHPMGIF TYSISASSST DSPTIRHLWG 360 SSSGTNSLNL ASEGIVEAAS SKPRRLSLSE TRTMPPVKGE PLKIRKS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009769498.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Refseq | XP_009769499.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Refseq | XP_009769500.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Refseq | XP_009769502.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Swissprot | Q9SWF9 | 0.0 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | A0A1U7W4E6 | 0.0 | A0A1U7W4E6_NICSY; zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
STRING | XP_009769498.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5289 | 24 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-152 | zinc finger protein 1 |