PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peinf101Scf00437g11001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 180aa MW: 21107.8 Da PI: 4.663 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 62.2 | 1e-19 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll+++v+++G g+W+++ar g++R +k+c++rw +yl Peinf101Scf00437g11001.1 17 KGPWTAEEDRLLIEYVNLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 64 79********************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-23 | 12 | 67 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.747 | 12 | 68 | IPR017930 | Myb domain |
SMART | SM00717 | 3.7E-17 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-18 | 17 | 64 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.38E-23 | 18 | 91 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.01E-13 | 19 | 64 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-6 | 68 | 90 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 180 aa Download sequence Send to blast |
MAEQMGNWGV IEEEWRKGPW TAEEDRLLIE YVNLHGEGRW NSVARLAGLK RNGKSCRLRW 60 VNYLRPDLKR GQITPYEERI ILELHAIWGN YENEVPILPQ RKQEMDFMYQ NTTEQEQGGG 120 FFYTMLNGYA TVPVPEVSSN EDMIMWDHGL WNLEDFNANF NTAAYNKTPP CLQPLATPFY |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-15 | 17 | 113 | 7 | 103 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975517 | 1e-37 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015075842.1 | 3e-63 | myb-related protein 305-like | ||||
Swissprot | P81391 | 3e-34 | MYB05_ANTMA; Myb-related protein 305 | ||||
TrEMBL | A0A2G3CHY1 | 2e-62 | A0A2G3CHY1_CAPCH; Myb-related protein | ||||
STRING | PGSC0003DMT400069955 | 9e-54 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA17516 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G24310.1 | 6e-49 | myb domain protein 305 |
Publications ? help Back to Top | |||
---|---|---|---|
|