PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00198g05005.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

FAR1

Protein Properties

Length: 398aa MW: 46471.2 Da PI: 9.6127

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00198g05005.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	77	3.7e-24	58	144	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fY ++A++ GFsvr+ + +ks++++ i+ + fvCskeg+r+++ k +++++ +tr gCk + v+k+++g+w + +l++ H Peinf101Scf00198g05005.1 58 NFYLDHAHRNGFSVRRGHVTKSRKDKLIIGQVFVCSKEGFRSKKYFK---NNKPQDVTREGCKVLIYVSKKEEGTWAIRRLVSGH 139 6***************************************99877...999**************************** PP FAR1 86 nHela 90 nHela Peinf101Scf00198g05005.1 140 NHELA 144 *97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-21	58	144	IPR004330	FAR1 DNA binding domain
Pfam	PF04434	5.8E-7	224	259	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.127	224	260	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.0E-4	235	262	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MEISNSEDDQ HIKGVEVASE EIDSDTDKTM RIVPDLGAEN RREPYIGMEF STLDDSFNFY 60 LDHAHRNGFS VRRGHVTKSR KDKLIIGQVF VCSKEGFRSK KYFKNNKPQD VTREGCKVLI 120 YVSKKEEGTW AIRRLVSGHN HELATPSSQK FLRSKRKKSE AQKNLIDLLD DSGVRPAKAY 180 TRKIFKIFRD ELVFSQKFVS EKIEVKDGMH IYKVHEFERQ KPAYIVTLNL ESRSAVCSCH 240 KFEFMGILCR HVLMIFIKIK IHSLPTCYLL DRWTRNATKE KVDDYPNETY KLRPALWFNN 300 IMMHSIWLSE RATRSKKYYQ LAHQRLLQLC EELDELSYEF EEDCAKVSES NLELKSLEQS 360 HITLLDPPQA ATKGRPRSLR MKGGLESTRK TQKSSSQR

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MEISNSEDDQ HIKGVEVASE EIDSDTDKTM RIVPDLGAEN RREPYIGMEF STLDDSFNFY  60
LDHAHRNGFS VRRGHVTKSR KDKLIIGQVF VCSKEGFRSK KYFKNNKPQD VTREGCKVLI  120
YVSKKEEGTW AIRRLVSGHN HELATPSSQK FLRSKRKKSE AQKNLIDLLD DSGVRPAKAY  180
TRKIFKIFRD ELVFSQKFVS EKIEVKDGMH IYKVHEFERQ KPAYIVTLNL ESRSAVCSCH  240
KFEFMGILCR HVLMIFIKIK IHSLPTCYLL DRWTRNATKE KVDDYPNETY KLRPALWFNN  300
IMMHSIWLSE RATRSKKYYQ LAHQRLLQLC EELDELSYEF EEDCAKVSES NLELKSLEQS  360
HITLLDPPQA ATKGRPRSLR MKGGLESTRK TQKSSSQR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025883762.1	1e-91	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_025886302.1	3e-89	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2G3CXF4	1e-125	A0A2G3CXF4_CAPCH; Uncharacterized protein
STRING	Solyc01g110070.1.1	3e-89	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA645	8	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	7e-22	FAR1-related sequence 3