PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00146g17037.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family G2-like
Protein Properties Length: 368aa    MW: 41715.2 Da    PI: 7.1167
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00146g17037.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.57.3e-29202251251
                   G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                               pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ
  Peinf101Scf00146g17037.1 202 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 251
                               9************************************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.69E-13199251IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.0E-25200251IPR009057Homeodomain-like
TIGRFAMsTIGR015575.5E-21202251IPR006447Myb domain, plants
PfamPF002491.1E-5203252IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MELFPAQPDL SLQISPPNNK PSWKGSTSAT VEQEDMDLGF WKRALESRNT NNNTTTTSCF  60
ELSLSNNNVP RPSSTTHQEP NSNFIHSSLH QNHFINNYQQ QLLQNQVLNP HHELGFLRPI  120
RGVPLYNQNP PAPTLSPFPF SHQQSFDTTT SLPSFNNSNN NNHNMMMSSS NSHFQSHHHH  180
QGGVIRSRFM SRFPVKRSMR APRMRWTSTL HARFVHAVEL LGGHERATPK SVLELMDVKD  240
LTLAHVKSHL QSEVYDNGSS GDNSEELVLE IQNSRKSELS VQQGIQNMHH QEKDYRGLWS  300
NSSSRESWQL HGKLGEDFPE NIPSLEKDME AKCLSYEGIS AEVSSSSITE ASPKKKPNLE  360
FTLGRTLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-14203251452Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-14203251452Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A4e-14203251351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-14203251351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-14203251351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-14203251351Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-14203251452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-14203251452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-14203251452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-14203251452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-14203251452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-14203251452Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0109395e-45AP010939.1 Solanum lycopersicum DNA, chromosome 8, clone: C08HBa0175O15, complete sequence.
GenBankHG9754475e-45HG975447.1 Solanum pennellii chromosome ch08, complete genome.
GenBankHG9755205e-45HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009615774.11e-151PREDICTED: probable transcription factor KAN2 isoform X3
RefseqXP_016459616.11e-151PREDICTED: probable transcription factor KAN2 isoform X3
SwissprotQ9C6164e-75KAN2_ARATH; Probable transcription factor KAN2
TrEMBLA0A1S3Z5E61e-149A0A1S3Z5E6_TOBAC; probable transcription factor KAN2 isoform X3
STRINGXP_009615772.11e-150(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27382255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16560.11e-41G2-like family protein
Publications ? help Back to Top
  1. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]