PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00118g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | YABBY | ||||||||
Protein Properties | Length: 190aa MW: 21129.1 Da PI: 9.4185 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 231.6 | 1.9e-71 | 9 | 167 | 4 | 170 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvek 88 ++sse+vCyv+CnfCntilavsvP + +f++vt+rCGhC++llsvn+ q l+ ++ ++ +l+++++n++ ++ Peinf101Scf00118g00003.1 9 TTSSERVCYVHCNFCNTILAVSVPCSNMFNIVTIRCGHCANLLSVNMGSLLQPLPLQDL-------QVIIKLQKQQSNVENASKA 86 6799***************************************************9994.......3444455555555555555 PP YABBY 89 eesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 s+s+s+ + ++ e+ prv p irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl Peinf101Scf00118g00003.1 87 CGSSSSSKCNRFSAIHSPENEPRVTP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 167 55555555554445677788899888.9****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 8.2E-74 | 11 | 167 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 8.51E-9 | 106 | 161 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 3.4E-5 | 115 | 161 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MSNDMTSSTT SSERVCYVHC NFCNTILAVS VPCSNMFNIV TIRCGHCANL LSVNMGSLLQ 60 PLPLQDLQVI IKLQKQQSNV ENASKACGSS SSSKCNRFSA IHSPENEPRV TPIRPPEKRQ 120 RVPSAYNRFI KEEIQRIKAS NPDISHREAF STAAKNWAHF PHIHFGLKLE SNKQAKLDHA 180 AGPHKSLGLY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ767669 | 1e-175 | KJ767669.1 Nicotiana tabacum FAS protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019234442.1 | 1e-105 | PREDICTED: axial regulator YABBY 5-like isoform X1 | ||||
Swissprot | Q9XFB0 | 8e-72 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | A0A1J6KYN5 | 1e-104 | A0A1J6KYN5_NICAT; Putative axial regulator yabby 2 | ||||
STRING | XP_009798278.1 | 1e-103 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA381 | 24 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 1e-66 | YABBY family protein |
Publications ? help Back to Top | |||
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