PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00091g04014.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

CAMTA

Protein Properties

Length: 1078aa MW: 120835 Da PI: 5.9837

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00091g04014.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	180.9	1.4e-56	20	136	2	118
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYa 86 l+ ++rwl++ ei++iL n++ ++++ e+++rp+sgsl+L++rk++ryfrkDG+sw+kkkdgktv+E+he+LK g+++vl+cyYa Peinf101Scf00091g04014.1 20 LEAQHRWLRPAEICEILRNYQTFKIAPEPPNRPPSGSLFLFDRKVLRYFRKDGHSWRKKKDGKTVKEAHERLKAGSIDVLHCYYA 104 5679******************************************************************************* PP CG-1 87 hseenptfqrrcywlLeeelekivlvhylevk 118 h+een++fqrr+yw+Lee++++ivlvhy+evk Peinf101Scf00091g04014.1 105 HGEENENFQRRSYWMLEEDMSHIVLVHYREVK 136 ***************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	83.143	15	141	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.3E-79	18	136	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	5.1E-50	21	134	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	7.4E-5	489	574	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	6.0E-16	490	576	IPR014756	Immunoglobulin E-set
Pfam	PF01833	9.8E-5	490	568	IPR002909	IPT domain
Gene3D	G3DSA:1.25.40.20	1.7E-19	674	788	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	19.678	676	787	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	3.89E-19	677	787	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	3.82E-14	681	784	No hit	No description
Pfam	PF12796	1.0E-8	698	788	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	10.392	726	758	IPR002110	Ankyrin repeat
SMART	SM00248	0.0011	726	755	IPR002110	Ankyrin repeat
SMART	SM00248	120	765	794	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	2.92E-6	897	952	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	23	901	923	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.492	903	931	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.15	904	922	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0042	924	946	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.285	925	949	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	4.9E-4	927	946	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009409	Biological Process	response to cold
GO:0010150	Biological Process	leaf senescence
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005516	Molecular Function	calmodulin binding

Sequence ? help Back to Top
Protein Sequence Length: 1078 aa Download sequence Send to blast
MANSRGYALN AQLDINQILL EAQHRWLRPA EICEILRNYQ TFKIAPEPPN RPPSGSLFLF 60 DRKVLRYFRK DGHSWRKKKD GKTVKEAHER LKAGSIDVLH CYYAHGEENE NFQRRSYWML 120 EEDMSHIVLV HYREVKGNRT NFSRIREPQQ ATPDFQETDD VHSSEVESSA SAKFYPNDYQ 180 VNSQVTDTTS LSSAQASEYE DAESVYNQHS TSGFHSFLDA QPSMMQNGGD AVPYRPVPFS 240 NDHQVQFAGR SDMNFSSIAP GNKGGNIENT YVPSRNLDLS WENISVNNPA AYQSYLYQPS 300 SQSDANNLMH EQGNAILGQV FSNDFKREEP QNRTDGLGDW RTSEGGSSFI SKWSMDQKLN 360 PDLASGGQQH KHPMQNELQS QLPDANVGGS LNADLHHNLS IGVKADYPAI KQPLLDGVLR 420 AGLKKLDSFD RWMSKELEDV SEPHMQSNSS SYWDNVGDED GVDNSTIASQ VQLDSYMLSP 480 SLSQDQFFSI IDFSPNWAFA ESEIKVLITG KFLKSQQEVE KCSWACMFGE LEVPAEVIAD 540 GVLRCHTPIQ KAGRVPFYIT CSNRLACSEV REFEFRVTDV QDVDVTNANT CSSSESLLHM 600 RFGKLLSLES TASQNSPPSC EDDVSHMCSN INSLLKEDDS EWDEMLHLTY ENNFMAEKVK 660 DQLLQKLLKE KLRVWLLQKV VEGGKGPNVL DEGGQGVLHF AAALGYDWAI PPTIAAGVSV 720 NFRDVNGWTA LHWAASYGRL RTVGFLISLG AAPGALTDPT PKHPSGRTPA DLASSNGHKG 780 IAGYLAESSL SSHLSFLGLK EKNQVENVQA FGVEDVQTAS ERTATPAWDG DWPHGVSLKD 840 SLAAVRNATQ AAARIHQVFR VQSFQRKQLK EYGGSEFGLS DERALSLLAL KTKRAGHHDE 900 PVQAAAVRIQ NKFRSWKGRR DYLLIRQRII KIQAHVRGHQ VRNKYKNIIW SVGILEKVIL 960 RWRRKGSGLR GFKPEALTEG SNTQDQPVQE DDYDFLKEGR KQTEVRLQKA LARVKSMVQY 1020 PEARDQYRRL LNVVSDMKEP KAANDGAPSS SVEAADFGDD LIDLDDLLDD DTFMPTAP

Sequence ? help Back to Top

Protein Sequence Length: 1078 aa Download sequence Send to blast

MANSRGYALN AQLDINQILL EAQHRWLRPA EICEILRNYQ TFKIAPEPPN RPPSGSLFLF  60
DRKVLRYFRK DGHSWRKKKD GKTVKEAHER LKAGSIDVLH CYYAHGEENE NFQRRSYWML  120
EEDMSHIVLV HYREVKGNRT NFSRIREPQQ ATPDFQETDD VHSSEVESSA SAKFYPNDYQ  180
VNSQVTDTTS LSSAQASEYE DAESVYNQHS TSGFHSFLDA QPSMMQNGGD AVPYRPVPFS  240
NDHQVQFAGR SDMNFSSIAP GNKGGNIENT YVPSRNLDLS WENISVNNPA AYQSYLYQPS  300
SQSDANNLMH EQGNAILGQV FSNDFKREEP QNRTDGLGDW RTSEGGSSFI SKWSMDQKLN  360
PDLASGGQQH KHPMQNELQS QLPDANVGGS LNADLHHNLS IGVKADYPAI KQPLLDGVLR  420
AGLKKLDSFD RWMSKELEDV SEPHMQSNSS SYWDNVGDED GVDNSTIASQ VQLDSYMLSP  480
SLSQDQFFSI IDFSPNWAFA ESEIKVLITG KFLKSQQEVE KCSWACMFGE LEVPAEVIAD  540
GVLRCHTPIQ KAGRVPFYIT CSNRLACSEV REFEFRVTDV QDVDVTNANT CSSSESLLHM  600
RFGKLLSLES TASQNSPPSC EDDVSHMCSN INSLLKEDDS EWDEMLHLTY ENNFMAEKVK  660
DQLLQKLLKE KLRVWLLQKV VEGGKGPNVL DEGGQGVLHF AAALGYDWAI PPTIAAGVSV  720
NFRDVNGWTA LHWAASYGRL RTVGFLISLG AAPGALTDPT PKHPSGRTPA DLASSNGHKG  780
IAGYLAESSL SSHLSFLGLK EKNQVENVQA FGVEDVQTAS ERTATPAWDG DWPHGVSLKD  840
SLAAVRNATQ AAARIHQVFR VQSFQRKQLK EYGGSEFGLS DERALSLLAL KTKRAGHHDE  900
PVQAAAVRIQ NKFRSWKGRR DYLLIRQRII KIQAHVRGHQ VRNKYKNIIW SVGILEKVIL  960
RWRRKGSGLR GFKPEALTEG SNTQDQPVQE DDYDFLKEGR KQTEVRLQKA LARVKSMVQY  1020
PEARDQYRRL LNVVSDMKEP KAANDGAPSS SVEAADFGDD LIDLDDLLDD DTFMPTAP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4hb5_A	3e-12	677	785	20	122	Engineered Protein
4hb5_B	3e-12	677	785	20	122	Engineered Protein
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:18298954, ECO:0000269\|PubMed:19122675, ECO:0000269\|PubMed:19270186, ECO:0000269\|PubMed:21900483, ECO:0000269\|PubMed:22345509, ECO:0000269\|PubMed:22371088, ECO:0000269\|PubMed:23072934, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25157030, ECO:0000269\|PubMed:28351986, ECO:0000269\|PubMed:28407487, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00042	PBM	Transfer from AT2G22300	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269\|PubMed:11162426, ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:22345509}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT013481	0.0	BT013481.1 Lycopersicon esculentum clone 132164R, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009613616.1	0.0	PREDICTED: calmodulin-binding transcription activator 3 isoform X2
Swissprot	Q8GSA7	0.0	CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBL	A0A2G2VCJ4	0.0	A0A2G2VCJ4_CAPBA; Calmodulin-binding transcription activator 3
STRING	XP_009613615.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2230	21	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	0.0	signal responsive 1

Publications ? help Back to Top
Zhang L,Du L,Shen C,Yang Y,Poovaiah BW Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling. Plant J., 2014. 78(2): p. 269-81 [PMID:24528504] Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae. Front Plant Sci, 2016. 7: p. 177 [PMID:26973658] Benn G, et al. Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60 [PMID:27432993] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lolle S, et al. Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles. Cell Host Microbe, 2017. 21(4): p. 518-529.e4 [PMID:28407487] Kim YS, et al. CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection. Plant Cell, 2017. 29(10): p. 2465-2477 [PMID:28982964] Jacob F, et al. A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana. New Phytol., 2018. 217(4): p. 1667-1680 [PMID:29226970]