PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peinf101Ctg13715789g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 224aa MW: 25659.6 Da PI: 6.7281 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.4 | 5.3e-08 | 16 | 62 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksL 54 + +E++RR+++++ +++L + lP+ s+K ++ + A++YIk+L Peinf101Ctg13715789g00001.1 16 KYVEKNRRNNLKNLYNQLYSKLPPH---ISQKeMTLPDQIDAAIKYIKNL 62 568*********************9...88888***************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.506 | 10 | 62 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-10 | 12 | 82 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.4E-8 | 14 | 80 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 224 aa Download sequence Send to blast |
MELGQICNSA PKLERKYVEK NRRNNLKNLY NQLYSKLPPH ISQKEMTLPD QIDAAIKYIK 60 NLNMKLEKSK MHLEELRMSN KRPESSMATQ EPTPINKSSP RIEIHEMNPT MLVILITGLD 120 TLATFYKIIR LLHEEGVEVV YANFSLNGNS MLQISHQSKI NGSSTVESKT TILSGKLKEL 180 LYGSSDDNDM ESLIHLWDYI VESEMLGFDS LELLPLETHK SSHI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009591015.1 | 5e-93 | PREDICTED: uncharacterized protein LOC104088099 | ||||
TrEMBL | A0A1U7YT30 | 2e-87 | A0A1U7YT30_NICSY; transcription factor bHLH120-like | ||||
STRING | XP_009591015.1 | 2e-92 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5297 | 14 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G20970.1 | 5e-13 | bHLH family protein |